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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G027200.1 | ||||||||
Common Name | PHAVU_007G027200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | CO-like | ||||||||
Protein Properties | Length: 410aa MW: 45980.3 Da PI: 5.207 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.7 | 2.6e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k+++++C ++ +lC+ C ++ H+ H++v Phvul.007G027200.1 16 ARACDSCITKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 59 578*****************************667888888876 PP | |||||||
2 | CCT | 68.1 | 2.3e-23 | 354 | 397 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a Phvul.007G027200.1 354 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 397 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.907 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.9E-10 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.8E-8 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.16E-8 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 354 | 396 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.7E-18 | 354 | 396 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MSTAKNAAIA VGGKTARACD SCITKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR 60 LKTASYKSTD EQQQQPPTWH TKKARTPRHG KHSRSSNPFH LVPEVGSEEV NSNEENEEQL 120 LYRVPIFDPF LAELCGTNSS SPSSVTSTDQ GAAAAVAEGE NKGVQSNFFY QSNNEMENLH 180 GMLPSDAELA EFAADVESLL GRGLENECVG MEDLGLIDAK EEECSEGSGK VKVEEESPEM 240 EMEMVGRDVS FELSFDYETC EEVKENVCDL EFGKEEEKEE EMMKKKKISL QLDYESVITA 300 WASQKSPWTT PHKPNLDPDE CWHHCMESCG TGMDDPYGEV GGFGIHPMIN DGGREARVSR 360 YREKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRASFA PPTFPLLNH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 364 | 380 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G027200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007142909.1 | 0.0 | hypothetical protein PHAVU_007G027200g | ||||
Swissprot | Q8RWD0 | 1e-103 | COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | V7BDC5 | 0.0 | V7BDC5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007142909.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 9e-96 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G027200.1 |
Entrez Gene | 18624682 |
Publications ? help Back to Top | |||
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