PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

MYB_related

Protein Properties

Length: 241aa MW: 27160.1 Da PI: 6.4239

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G023600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	5.2e-14	123	167	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Phvul.007G023600.1 123 PWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKY 167 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.982	12	66	IPR017877	Myb-like domain
SuperFamily	SSF46689	6.43E-9	14	65	IPR009057	Homeodomain-like
SMART	SM00717	0.24	16	68	IPR001005	SANT/Myb domain
CDD	cd00167	0.00221	19	62	No hit	No description
PROSITE profile	PS51294	20.521	116	172	IPR017930	Myb domain
SuperFamily	SSF46689	6.68E-17	118	172	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-17	119	171	IPR006447	Myb domain, plants
SMART	SM00717	7.3E-11	120	170	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-11	120	166	IPR009057	Homeodomain-like
CDD	cd00167	7.94E-10	123	168	No hit	No description
Pfam	PF00249	6.6E-12	123	167	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MFHESSVTRW QTQPVQPTEW TRYHDKLFER ALLLVPEDLP DRWNQIAGHV PGMSPAEVRE 60 HYDALVHDVF EIDSGRVEVP SYVDDSAPQL SGGAGNSAWD SANQISFGSK PKQGDSERKK 120 GTPWTEEEHR LFLIGLSKFG KGDWRSISRN VVVTRTPTQV ASHAQKYFLR QNSGKKERKR 180 SSIHDITTVD SNSVPVPIDQ NWVPPPGASM QQSQDMLQYP SSNMHDQMGP FGYSSYGFEM 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-13	20	82	11	73	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G023600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007142868.1	1e-180	hypothetical protein PHAVU_007G023600g
Swissprot	Q8S9H7	3e-61	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	V7BAF7	1e-178	V7BAF7_PHAVU; Uncharacterized protein
STRING	XP_007142868.1	1e-179	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6068	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	3e-80	MYB family protein

Link Out ? help Back to Top
Phytozome	Phvul.007G023600.1
Entrez Gene	18624645

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]