PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G004800.1 | ||||||||
Common Name | PHAVU_007G004800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 377aa MW: 41017.4 Da PI: 9.4066 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 245 | 268 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+Cp+Cg +F ++ + H + H Phvul.007G004800.1 245 YTCPKCGCVFETSQRFAAHVSWrH 268 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.808 | 245 | 273 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 247 | 268 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0090057 | Biological Process | root radial pattern formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MAMNSTKSNN FSATLFPLSA SNTVSKREAL AVKGMSQLGL NQRVESLRKI SLATKSRAVM 60 FHGNAAEKVK GKEVLRGQFW GSLGDGGDTE RILRASEIVR VKLENAVCNA ITEQSNKKAK 120 EMVQAKLLSA SPFASETDAV GGTSSTQLAI IAPLQRGSFL NHFAYPFPNN CKSSHFSESE 180 VDKSMTLCAT PLSVCFPHES NYGREKTRNS NVGGEAVEDV CCREDDEREY DGRMHSNPYK 240 KNGPYTCPKC GCVFETSQRF AAHVSWRHYK YETKSERKKR MMAKIRRRSL RLEWENGALT 300 VVADHDAPRA TAFGFAGNNT NVAAPPATAT APVEVKTETE TGVGLQLAPP PGWPKRTGGG 360 PESAGGCRIK MEALDN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G004800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007142642.1 | 0.0 | hypothetical protein PHAVU_007G004800g | ||||
TrEMBL | V7BDV8 | 0.0 | V7BDV8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007142642.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16742 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18490.1 | 1e-14 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G004800.1 |
Entrez Gene | 18624454 |