PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G004800.1
Common NamePHAVU_007G004800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 377aa    MW: 41017.4 Da    PI: 9.4066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G004800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017245268123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y+Cp+Cg +F ++  +  H +  H
  Phvul.007G004800.1 245 YTCPKCGCVFETSQRFAAHVSWrH 268
                         9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.808245273IPR007087Zinc finger, C2H2
PROSITE patternPS000280247268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090057Biological Processroot radial pattern formation
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAMNSTKSNN FSATLFPLSA SNTVSKREAL AVKGMSQLGL NQRVESLRKI SLATKSRAVM  60
FHGNAAEKVK GKEVLRGQFW GSLGDGGDTE RILRASEIVR VKLENAVCNA ITEQSNKKAK  120
EMVQAKLLSA SPFASETDAV GGTSSTQLAI IAPLQRGSFL NHFAYPFPNN CKSSHFSESE  180
VDKSMTLCAT PLSVCFPHES NYGREKTRNS NVGGEAVEDV CCREDDEREY DGRMHSNPYK  240
KNGPYTCPKC GCVFETSQRF AAHVSWRHYK YETKSERKKR MMAKIRRRSL RLEWENGALT  300
VVADHDAPRA TAFGFAGNNT NVAAPPATAT APVEVKTETE TGVGLQLAPP PGWPKRTGGG  360
PESAGGCRIK MEALDN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G004800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142642.10.0hypothetical protein PHAVU_007G004800g
TrEMBLV7BDV80.0V7BDV8_PHAVU; Uncharacterized protein
STRINGXP_007142642.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1674277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18490.11e-14C2H2-like zinc finger protein