PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 681aa MW: 77891.8 Da PI: 7.9333

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G220900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68	2.3e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY+e+Ak+ GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnH Phvul.006G220900.1 63 EFYSEFAKRSGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKTSTESKPQRNRKSSRCGCQAYMRISKTTefgAPEWRVTGFANHHNH 153 6************9998877356667999*********9999999****************9988888*********** PP FAR1 88 ela 90 el Phvul.006G220900.1 154 ELL 156 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-18	63	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-20	279	370	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.211	554	590	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.4E-6	556	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.2E-5	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MMSEDAGSML VVYDDVSDQR SLSLDDASSA EESPDETRLS LESTHDAIPY IGQRFATHDA 60 AYEFYSEFAK RSGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPAKTST ESKPQRNRKS 120 SRCGCQAYMR ISKTTEFGAP EWRVTGFANH HNHELLEPNQ VRFLPAYRTI SDADKNRILM 180 FAKTGISVHQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEEESL DLLRMCRNIK 240 EKDPNFKFEY TLDANNRLEN IAWSYASSIQ WFEIFGDAVV FDTTHRLTAF DMPLGIWVGI 300 NNYGMPCFFG CTLLRDETVR SFSWALKAFL GFMNGKAPQT ILTDQNICLK EALCTEMPTT 360 KHAFCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES VEDFELGWRE MVCSFGLHSN 420 RHMVNLYSSR SLWALPFLRS HFLAGMTSTG QSKSINAFIQ RFLSAQTRLA HFVEQVAVAV 480 DFKDQTGEQQ TMQQNLQNVC LKTGAPMESH AATILTPFAF SKLQEQLVLA AHYASFSIED 540 GFLVRHHTKA EGGRKVYWGP QEGIISCSCH QFEFTGILCR HSLRVLSTGN CFQIPDRYLP 600 IRWRRISMPS TKLLQSPPNE HAERVKLLQN MVSSLMTESA KSKERLDIAT EQVSILLSRI 660 REQPISLQGG RDISSINRNL *

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MMSEDAGSML VVYDDVSDQR SLSLDDASSA EESPDETRLS LESTHDAIPY IGQRFATHDA  60
AYEFYSEFAK RSGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPAKTST ESKPQRNRKS  120
SRCGCQAYMR ISKTTEFGAP EWRVTGFANH HNHELLEPNQ VRFLPAYRTI SDADKNRILM  180
FAKTGISVHQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEEESL DLLRMCRNIK  240
EKDPNFKFEY TLDANNRLEN IAWSYASSIQ WFEIFGDAVV FDTTHRLTAF DMPLGIWVGI  300
NNYGMPCFFG CTLLRDETVR SFSWALKAFL GFMNGKAPQT ILTDQNICLK EALCTEMPTT  360
KHAFCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES VEDFELGWRE MVCSFGLHSN  420
RHMVNLYSSR SLWALPFLRS HFLAGMTSTG QSKSINAFIQ RFLSAQTRLA HFVEQVAVAV  480
DFKDQTGEQQ TMQQNLQNVC LKTGAPMESH AATILTPFAF SKLQEQLVLA AHYASFSIED  540
GFLVRHHTKA EGGRKVYWGP QEGIISCSCH QFEFTGILCR HSLRVLSTGN CFQIPDRYLP  600
IRWRRISMPS TKLLQSPPNE HAERVKLLQN MVSSLMTESA KSKERLDIAT EQVSILLSRI  660
REQPISLQGG RDISSINRNL *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G220900.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007148586.1	0.0	hypothetical protein PHAVU_006G220900g
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	V7BU54	0.0	V7BU54_PHAVU; Uncharacterized protein
STRING	XP_007148586.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Phvul.006G220900.1
Entrez Gene	18629584

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]