PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G217200.1
Common NamePHAVU_006G217200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 647aa    MW: 74177.3 Da    PI: 9.1506
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G217200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-08463504240
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                         ++W++eE +ll ++ +++++g   +W+ I++++g+gR+ +++
  Phvul.006G217200.1 463 KPWSKEEIDLLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 504
                         69************************************9987 PP
2Myb_DNA-binding24.37.3e-08589633345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                          W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
  Phvul.006G217200.1 589 VWSAVHERALVQALKAFPKEtsqRWERVAAAVP-GKTVNQCKKKFA 633
                         6999999**************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.2E-2091196IPR001623DnaJ domain
SuperFamilySSF465656.28E-1993201IPR001623DnaJ domain
SMARTSM002713.2E-1394169IPR001623DnaJ domain
PROSITE profilePS5007618.0995177IPR001623DnaJ domain
CDDcd062572.26E-1295166IPR001623DnaJ domain
PfamPF002264.4E-1795174IPR001623DnaJ domain
PRINTSPR006257.2E-8100118IPR001623DnaJ domain
PRINTSPR006257.2E-8118133IPR001623DnaJ domain
PRINTSPR006257.2E-8149169IPR001623DnaJ domain
PROSITE patternPS006360154173IPR018253DnaJ domain, conserved site
PROSITE profilePS512936.758460515IPR017884SANT domain
SMARTSM007175.8E-7461514IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-5463505IPR009057Homeodomain-like
PfamPF002493.0E-7463504IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-8463507IPR009057Homeodomain-like
CDDcd001672.89E-5464506No hitNo description
PROSITE profilePS512939.396585640IPR017884SANT domain
SMARTSM007179.5E-8586638IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-5587633IPR009057Homeodomain-like
SuperFamilySSF466892.84E-8588642IPR009057Homeodomain-like
PfamPF002491.4E-6589635IPR001005SANT/Myb domain
CDDcd001671.40E-5590636No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAVHTKFRLI TYSQEIVDGQ PIFVSSNCLP TKALKYEPAG HSFHSAALKL RGVQEEKNEA  60
DDKKVVDDKE QTYLPSDSYS SKSKKKSGTG DKQQDHYALL GLGHLRYLAT EDQIRKSYRE  120
TALRFHPDKQ AALLLAEETE AAKQAKKDEI ESHFKAIQEA YEVLTDSVKR RIYDSTDEFD  180
DEIPTDCAPQ DFFKVFGPAF MRNGRWSVNQ PIPTLGDDNT PLKEVDNFYN FWYSFKSWRE  240
FPHADEFDLE QAESRDHKRW MERQNAKLTE KARKEDYARI RTLVDNAYKR DPRISRRKEE  300
EKAQKQRKKE AKFLAKKLQE EEAARIAEEE KQRKEEEERQ AAEAALQQKK VKEKEKKLLR  360
KERARLRTLS GPILSQRLLD ISDDDVERLC MSLDIEQMRS LCENMEGRQV LLEQASVLRD  420
ALSSKKDEKT IKADEKTNQQ NSNGSIKANG SASRSNVEKK EEKPWSKEEI DLLRKGMQKY  480
PKGTSRRWEV ISEYIGTGRS VEEIMKATKT VLLQKPDSSK AFDTFLEKRK PGAQSIESPL  540
TTREELEGVS TPTPTPASTN NTEDSHSKNT DNQNSASANG VSSSSEQDVW SAVHERALVQ  600
ALKAFPKETS QRWERVAAAV PGKTVNQCKK KFAMMKENFR NKKTAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-2019129420123Zuotin
5dje_B2e-2019129420123Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G217200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148540.10.0hypothetical protein PHAVU_006G217200g
TrEMBLV7BRD40.0V7BRD4_PHAVU; Uncharacterized protein
STRINGXP_007148540.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain