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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Phvul.006G202300.1 |
| Common Name | PHAVU_006G202300g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 209aa MW: 23812.2 Da PI: 9.7286 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.006G202300.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 81.9 | 4.1e-26 | 11 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien rqvtfskRr+g++KKA+ELS+LCda++a+i++s t kl+ey++
Phvul.006G202300.1 11 KKIENINARQVTFSKRRKGLFKKAQELSTLCDAQIALIVISATSKLFEYAT 61
68***********************************************86 PP
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| 2 | K-box | 38.9 | 3.7e-14 | 78 | 171 | 5 | 98 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95
+g++ +++ ++ ++ ++ L kei +e+ +l G++L+ L+++eL++Le+ L + ++i + K+e ++++i+ l+ ke el een++L+
Phvul.006G202300.1 78 QGSDISSTAQQLGSESFDMLHKEIVDKTHELSRLNGKELQGLTIQELHKLEELLLRRWTTISKIKDEKITQEINSLKTKEAELTEENQKLK 168
5566777777888889999999999999*************************************************************** PP
K-box 96 kkl 98
+kl
Phvul.006G202300.1 169 QKL 171
*97 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 27.964 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.4E-35 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 6.93E-29 | 3 | 77 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.66E-35 | 4 | 80 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-23 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.1E-24 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-23 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-23 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 4.0E-11 | 86 | 171 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 9.803 | 87 | 177 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 209 aa
Download sequence Send
to blast |
MIMARRKIAM KKIENINARQ VTFSKRRKGL FKKAQELSTL CDAQIALIVI SATSKLFEYA 60
TSSMQQIFER RNRHSGVQGS DISSTAQQLG SESFDMLHKE IVDKTHELSR LNGKELQGLT 120
IQELHKLEEL LLRRWTTISK IKDEKITQEI NSLKTKEAEL TEENQKLKQK LVPEQRQCYE 180
SITSSSSDFP PDNGPSDTSL NLGLRLFE*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
