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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G196300.1 | ||||||||
Common Name | PHAVU_006G196300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | GeBP | ||||||||
Protein Properties | Length: 427aa MW: 46419.5 Da PI: 5.9834 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 103.1 | 2.4e-32 | 177 | 276 | 1 | 98 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 k+fqrlwse+Dei++L+Gl df++ktg +p + +af+ f+kks++++v+++ql eK rrLKkK+++ + + + +fsk+hdq +f Phvul.006G196300.1 177 KKFQRLWSEDDEIAILKGLADFTSKTGHDPLKfeGGNAFHAFLKKSLHVEVTSNQLKEKARRLKKKYETAAVRGNGADGLTFSKPHDQRTF 267 68**************************77655499******************************************************* PP DUF573 90 elskkiWgs 98 elskk+Wgs Phvul.006G196300.1 268 ELSKKVWGS 276 *******95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.7E-32 | 179 | 275 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MAQKQKRPSP LDEPPTASSS DSEEEETQKP SSLRHGEEEE EEASSGEEEE ESSGEEAEDD 60 DLPPPITKTN PPPPPTNPHP QPSSSDSETA SESETESETE STPAKAVKPL ASKPMDQAPK 120 LKALPSPAPP KPPLKRAAEN INSNVAKKKK KSGDSSSSAA ASDEEMEDGK KSGDQMKKFQ 180 RLWSEDDEIA ILKGLADFTS KTGHDPLKFE GGNAFHAFLK KSLHVEVTSN QLKEKARRLK 240 KKYETAAVRG NGADGLTFSK PHDQRTFELS KKVWGSEIDG AVANGAVEKP KANGNAAKSP 300 KKKETGSRNV SSAKKTKPEP KPEVVPGPRF DLNESEKTQS NQKPVSCEVS MFLHAVSRFK 360 EGLGVFGLDE GDVTRGLELI GESKRAELRA KWKKLQRTEL ELFANRSELI GEQTKLIVEA 420 LRSSNH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G196300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148295.1 | 0.0 | hypothetical protein PHAVU_006G196300g | ||||
TrEMBL | V7BQP8 | 0.0 | V7BQP8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148295.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 2e-28 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G196300.1 |
Entrez Gene | 18629336 |