PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G195400.1
Common NamePHAVU_006G195400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 208aa    MW: 24332.7 Da    PI: 4.6827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G195400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.43.9e-064085555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        + e+ErrRR+++  ++  Lr++ P       + ++  +i   A+ YI +Lq
  Phvul.006G195400.1 40 NLEVERRRREKLSRRLLMLRSINPFI-----TNMNRGTIIVDAITYIEKLQ 85
                        6699*********************6.....68*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-1233100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1234104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.5223584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-64190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEHEDEDWLC VTIEENDCST QRMSRKRNYD DNTREFKSKN LEVERRRREK LSRRLLMLRS  60
INPFITNMNR GTIIVDAITY IEKLQDEVQS LSQQLHQMEA TSEETAETKI DEIEAVEDMK  120
NWGIQAEVIV AQIDENKLWV KIIIEKKRGS FSKLMETLNY FGIELIDTNL TTTKGAFLIT  180
SCIQVKDGER LQINQIKNLL QDIINDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14348ERRRRE
24449RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G195400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150382e-86AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148285.11e-149hypothetical protein PHAVU_006G195400g
TrEMBLV7BQN91e-148V7BQN9_PHAVU; Uncharacterized protein
STRINGXP_007148285.11e-149(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.11e-32bHLH family protein