PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G171700.2
Common NamePHAVU_006G171700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 387aa    MW: 43876.7 Da    PI: 4.773
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G171700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82e-34151062102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sws +++sfvv+++ ef+k++Lp++Fkhsnf+SF+RQLn+YgF+k++ e          weF+++ F +g+ +
  Phvul.006G171700.2  15 FLSKTYDMVDDPSTNSIVSWSVTNKSFVVWNPPEFSKDLLPRFFKHSNFSSFIRQLNTYGFRKIDPEL---------WEFANEGFVRGQPH 96 
                         9********************999****************************************9877.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Phvul.006G171700.2  97 LLKNIHRRKP 106
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-38499IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.99E-3510104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-6211104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MMEEAQGNSS SLPPFLSKTY DMVDDPSTNS IVSWSVTNKS FVVWNPPEFS KDLLPRFFKH  60
SNFSSFIRQL NTYGFRKIDP ELWEFANEGF VRGQPHLLKN IHRRKPVHSH SLQNIQVQGS  120
SPLTKSERQS FKDEIRKLKD EKDQILRELE RHEQEWGMYE VQLQYSNDRL EQLEKKQENL  180
VSSVSEVLQK PGIALNLLPL TENGDRKRRL PRSGLFSDDD SIEDHMETSS VLPGVNAEGA  240
SIFAPNMERF DILESSIMFW ENIAHDVQSH VNMDLDETTS CADSPAISSV QLEVEVQPKS  300
PGINVNSESA VAAVPDLDAS KESPVGTVPV ATGVNDIFWE RFLTENPGSE NQEVHSERKD  360
SDGRSNAKFW WNIRNVNNPP EQIGHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-231010415120Heat shock factor protein 1
5d5u_B5e-231010424129Heat shock factor protein 1
5d5v_B5e-231010424129Heat shock factor protein 1
5d5v_D5e-231010424129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G171700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147994.10.0hypothetical protein PHAVU_006G171700g
RefseqXP_007147995.10.0hypothetical protein PHAVU_006G171700g
SwissprotO494031e-112HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLV7BPT70.0V7BPT7_PHAVU; Uncharacterized protein
STRINGXP_007147994.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-114heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]