PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 761aa MW: 87890.5 Da PI: 7.6256

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G157300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.9	4.6e-20	43	117	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+ + +gkw++++++++HnH+l Phvul.006G157300.1 43 QFYTSYANRAGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLS--------------SRTGCPAFIRVQINGSGKWVIDHFHKDHNHNL 117 6************************************8765..............699*************************99 PP
2	FAR1	66.8	5.6e-21	197	272	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA ++GF vr+ + +sk++g it+r+fvCskeg++++ +r+gC a l++k++ +gkw v++l+++HnH+l Phvul.006G157300.1 197 QFYHAYAARMGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHP--------------SRVGCGAYLRIKRQPSGKWTVDRLRKDHNHDLD 272 6*************************************999..............4899************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-16	43	117	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.5E-17	197	272	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.2E-27	371	464	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.348	646	682	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.4E-9	653	679	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-6	657	684	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence Send to blast
MIVKEHFVGT ELAMNNAIVE EEIDFSCDPY IGLEFDTADE ALQFYTSYAN RAGFKVRIGQ 60 LYRSRTDGSV SSRRFVCSKE GHQLSSRTGC PAFIRVQING SGKWVIDHFH KDHNHNLEIS 120 GENCTPTLQQ KGGTVVSSLT EFTRRPRKKL LEEVNNESSC PFGIIDFKRL RKEELEGQPK 180 TEPYVGQEFS SPNEAYQFYH AYAARMGFGV RIGQLFRSKN DGLITSRRFV CSKEGFQHPS 240 RVGCGAYLRI KRQPSGKWTV DRLRKDHNHD LDSEKEGRAK GLHASNILND DADNGFVNGD 300 LFRIDNYPVP RGGRQNHIRN EWYSILLEYF QARQTEDTGF FYAVEVDNGN CMSIFWADGR 360 SRYSCSQFGD VLVLDTSYRK TVYLVPFATF VGVNHHKQPV LLGCALVADE SEESFTWLFQ 420 TWLRAMSGRQ PLTVIADQDI AVQKAIAKVF PVTYHRFSLW QIKAKEQENM GLMGDGFTKD 480 YEKCVYQSQT VDEFDATWNV LLNKYGLKDN AWLKEMYEKR ASWVPLYLKG TFFAGIPMNE 540 SLDSFFGALL NAQTPLMEFI PRYERGLERR REEERKEDFN TSNFQPILQT KEAVEEQCRR 600 LYTLAVFKVF QKELLQCFSY LGFKIFEEGG LSRYMVRRCG NDMEKHVVTF NASNLSISCS 660 CQMFEYDGVL CRHVLRVFQI LQLREVPSRY ILHRWTRNAE DGVFPDIDSW SSSQELKNLM 720 LWSLRETASK YIDAGATSIE KYKLAYEILR EGGRKLCWHR *

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence Send to blast

MIVKEHFVGT ELAMNNAIVE EEIDFSCDPY IGLEFDTADE ALQFYTSYAN RAGFKVRIGQ  60
LYRSRTDGSV SSRRFVCSKE GHQLSSRTGC PAFIRVQING SGKWVIDHFH KDHNHNLEIS  120
GENCTPTLQQ KGGTVVSSLT EFTRRPRKKL LEEVNNESSC PFGIIDFKRL RKEELEGQPK  180
TEPYVGQEFS SPNEAYQFYH AYAARMGFGV RIGQLFRSKN DGLITSRRFV CSKEGFQHPS  240
RVGCGAYLRI KRQPSGKWTV DRLRKDHNHD LDSEKEGRAK GLHASNILND DADNGFVNGD  300
LFRIDNYPVP RGGRQNHIRN EWYSILLEYF QARQTEDTGF FYAVEVDNGN CMSIFWADGR  360
SRYSCSQFGD VLVLDTSYRK TVYLVPFATF VGVNHHKQPV LLGCALVADE SEESFTWLFQ  420
TWLRAMSGRQ PLTVIADQDI AVQKAIAKVF PVTYHRFSLW QIKAKEQENM GLMGDGFTKD  480
YEKCVYQSQT VDEFDATWNV LLNKYGLKDN AWLKEMYEKR ASWVPLYLKG TFFAGIPMNE  540
SLDSFFGALL NAQTPLMEFI PRYERGLERR REEERKEDFN TSNFQPILQT KEAVEEQCRR  600
LYTLAVFKVF QKELLQCFSY LGFKIFEEGG LSRYMVRRCG NDMEKHVVTF NASNLSISCS  660
CQMFEYDGVL CRHVLRVFQI LQLREVPSRY ILHRWTRNAE DGVFPDIDSW SSSQELKNLM  720
LWSLRETASK YIDAGATSIE KYKLAYEILR EGGRKLCWHR *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G157300.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007147816.1	0.0	hypothetical protein PHAVU_006G157300g
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	V7BRY7	0.0	V7BRY7_PHAVU; Uncharacterized protein
STRING	XP_007147816.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Phvul.006G157300.1
Entrez Gene	18628936

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]