PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G128600.1
Common NamePHAVU_006G128600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 848aa    MW: 92943.9 Da    PI: 6.0594
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G128600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181876357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Phvul.006G128600.1 18 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                        6789*****************************************************97 PP

2START170.21.3e-531673742204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +e+l  + +g  g+
  Phvul.006G128600.1 167 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRQSWYRDCRCVEVLSIVPTGngGT 256
                         68999*****************************************************.8888888888********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++lm+++++a+++l++ Rd++++Ry+ +l++g++vi+++S++s +  p+   +  ++Rae+lpSg+li+p+++g+s +++v+h+dl+ +++
  Phvul.006G128600.1 257 IELMYMQTYAPTTLAAaRDYWTLRYTTSLEDGSLVICERSLTSSTGGPTgppTTTFIRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDIWSV 347
                         ********************************************999999999************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         +++lr+l++s+ + ++k + a+lq+ +
  Phvul.006G128600.1 348 PEVLRPLYESSKILAQKLTIAALQHIR 374
                         ************************866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.711377IPR001356Homeobox domain
SMARTSM003898.6E-161581IPR001356Homeobox domain
SuperFamilySSF466891.37E-161880IPR009057Homeodomain-like
CDDcd000861.14E-161878No hitNo description
PfamPF000463.1E-161876IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-182076IPR009057Homeodomain-like
CDDcd146861.79E-670109No hitNo description
PROSITE profilePS5084825.608157358IPR002913START domain
CDDcd088753.25E-66161377No hitNo description
Gene3DG3DSA:3.30.530.202.4E-21165349IPR023393START-like domain
SMARTSM002342.4E-50166376IPR002913START domain
PfamPF018524.5E-51167374IPR002913START domain
SuperFamilySSF559615.49E-36167378No hitNo description
SuperFamilySSF559614.4E-5414499No hitNo description
SuperFamilySSF559614.4E-5527601No hitNo description
PfamPF086701.5E-46701846IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MALSLHKDSA NNQMDSSKYV RYTPEQVEAL ERVYAECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSH LVYENGYMKQ  120
QIQTASAGTT TDNSCESVVM SGQNQQQNPT PQHPNRDANN PAGLLAIAEE TLAEFLSKAT  180
GTAVDWVQMI GMKPGPDSIG IVAVSRNCSG VAARACGLVS LEPTKVAEIL KDRQSWYRDC  240
RCVEVLSIVP TGNGGTIELM YMQTYAPTTL AAARDYWTLR YTTSLEDGSL VICERSLTSS  300
TGGPTGPPTT TFIRAEMLPS GYLIRPCEGG GSIIHIVDHI DLDIWSVPEV LRPLYESSKI  360
LAQKLTIAAL QHIRQIAQES SGEIQYGGGR QPAVLRTFSQ RLCRGFNDAV NGFVDDGWSL  420
MGTDGVEDVT IAINSSPNKF LGSNYNASMF PSFGGGVLCA KASMLLQNVP PALLVRFLRE  480
HRSEWADYGV DAYSAACLKA SSYAVPCARP GGFPSSQVIL PLAHTIEHEE FLEVVRIEGH  540
AFSPEDVTLA RDMYLLQLCS GVDENAIGAC AQLVFAPIDE SFADDALLLP SGFRVIPLDP  600
KSDGPAATRT LDLASTMEVG SANARPAGEA DLNGYNLRSV LTIAFQFTFE NHTRDNVAAM  660
ARQYVRSVVG SVQRVAMAIA PSRLSTQLGP KSLPGSPEAL TLARWISRSY RIYTATELFR  720
SESTAGGDAI LKQLWHHSDA IMCCSVKTNA SPVFTFANQA GLDMLETTLV ALQDIILDKV  780
LDESGRKILC SEFSKIMQQG FAYLPAGICV SSMNRPVSYE QAIAWKVLND DDSNHCLAFM  840
FMSWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G128600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147487.10.0hypothetical protein PHAVU_006G128600g
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLV7BSD40.0V7BSD4_PHAVU; Uncharacterized protein
STRINGXP_007147487.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]