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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G128600.1 | ||||||||
Common Name | PHAVU_006G128600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 848aa MW: 92943.9 Da PI: 6.0594 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 18 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Phvul.006G128600.1 18 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 6789*****************************************************97 PP | |||||||
2 | START | 170.2 | 1.3e-53 | 167 | 374 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +e+l + +g g+ Phvul.006G128600.1 167 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRQSWYRDCRCVEVLSIVPTGngGT 256 68999*****************************************************.8888888888********************** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++lm+++++a+++l++ Rd++++Ry+ +l++g++vi+++S++s + p+ + ++Rae+lpSg+li+p+++g+s +++v+h+dl+ +++ Phvul.006G128600.1 257 IELMYMQTYAPTTLAAaRDYWTLRYTTSLEDGSLVICERSLTSSTGGPTgppTTTFIRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDIWSV 347 ********************************************999999999************************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 178 hwllrslvksglaegaktwvatlqrqc 204 +++lr+l++s+ + ++k + a+lq+ + Phvul.006G128600.1 348 PEVLRPLYESSKILAQKLTIAALQHIR 374 ************************866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.71 | 13 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-16 | 15 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-16 | 18 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.14E-16 | 18 | 78 | No hit | No description |
Pfam | PF00046 | 3.1E-16 | 18 | 76 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 20 | 76 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.79E-6 | 70 | 109 | No hit | No description |
PROSITE profile | PS50848 | 25.608 | 157 | 358 | IPR002913 | START domain |
CDD | cd08875 | 3.25E-66 | 161 | 377 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.4E-21 | 165 | 349 | IPR023393 | START-like domain |
SMART | SM00234 | 2.4E-50 | 166 | 376 | IPR002913 | START domain |
Pfam | PF01852 | 4.5E-51 | 167 | 374 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.49E-36 | 167 | 378 | No hit | No description |
SuperFamily | SSF55961 | 4.4E-5 | 414 | 499 | No hit | No description |
SuperFamily | SSF55961 | 4.4E-5 | 527 | 601 | No hit | No description |
Pfam | PF08670 | 1.5E-46 | 701 | 846 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 848 aa Download sequence Send to blast |
MALSLHKDSA NNQMDSSKYV RYTPEQVEAL ERVYAECPKP SSLRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSH LVYENGYMKQ 120 QIQTASAGTT TDNSCESVVM SGQNQQQNPT PQHPNRDANN PAGLLAIAEE TLAEFLSKAT 180 GTAVDWVQMI GMKPGPDSIG IVAVSRNCSG VAARACGLVS LEPTKVAEIL KDRQSWYRDC 240 RCVEVLSIVP TGNGGTIELM YMQTYAPTTL AAARDYWTLR YTTSLEDGSL VICERSLTSS 300 TGGPTGPPTT TFIRAEMLPS GYLIRPCEGG GSIIHIVDHI DLDIWSVPEV LRPLYESSKI 360 LAQKLTIAAL QHIRQIAQES SGEIQYGGGR QPAVLRTFSQ RLCRGFNDAV NGFVDDGWSL 420 MGTDGVEDVT IAINSSPNKF LGSNYNASMF PSFGGGVLCA KASMLLQNVP PALLVRFLRE 480 HRSEWADYGV DAYSAACLKA SSYAVPCARP GGFPSSQVIL PLAHTIEHEE FLEVVRIEGH 540 AFSPEDVTLA RDMYLLQLCS GVDENAIGAC AQLVFAPIDE SFADDALLLP SGFRVIPLDP 600 KSDGPAATRT LDLASTMEVG SANARPAGEA DLNGYNLRSV LTIAFQFTFE NHTRDNVAAM 660 ARQYVRSVVG SVQRVAMAIA PSRLSTQLGP KSLPGSPEAL TLARWISRSY RIYTATELFR 720 SESTAGGDAI LKQLWHHSDA IMCCSVKTNA SPVFTFANQA GLDMLETTLV ALQDIILDKV 780 LDESGRKILC SEFSKIMQQG FAYLPAGICV SSMNRPVSYE QAIAWKVLND DDSNHCLAFM 840 FMSWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G128600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007147487.1 | 0.0 | hypothetical protein PHAVU_006G128600g | ||||
Swissprot | O04291 | 0.0 | ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | V7BSD4 | 0.0 | V7BSD4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007147487.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5176 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G128600.1 |
Entrez Gene | 18628643 |