PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G126500.1
Common NamePHAVU_006G126500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 709aa    MW: 78931 Da    PI: 6.5117
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G126500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.77e-172780356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        +  ++t++q+ +Le++ + +++p++++r++LA+++gL+ rq+k+WFqN+R++ k
  Phvul.006G126500.1 27 SYKRLTSSQTARLERFIKDCPHPDEAQRRQLAAEIGLEPRQIKFWFQNKRTQIK 80
                        56789*********************************************9988 PP
2START122.17.3e-392254452205
                         HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS
               START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWd 73 
                         +a +a++el+++   +ep+W kss          e    + +                   ++ea ++sg+v  ++ +lv  +ld++ +W 
  Phvul.006G126500.1 225 VAATAMDELIRLLRINEPFWIKSStqdgklylLLE---NYQK------MfpktkhfkgpnVRIEATKESGIVSINSLQLVDMFLDSN-KWV 305
                         6889********************65433333222...2333......2233334777889**************************.*** PP

                         TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEE CS
               START  74 etla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgil 153
                         + ++    kaetl+v++ g      galqlm+ ++ +lsp v  R+f f+R+++q  ++++vi+dvS ds q+++   s+  + ++pSg+l
  Phvul.006G126500.1 306 NLFPtivsKAETLKVLERGsagnrsGALQLMSEQMHVLSPFVQpREFQFLRFCQQ-IEEGLVIADVSFDSFQQKS---SIFHSWKYPSGCL 392
                         99999999********************************8766***********.9999*****9999999965...8************ PP

                         EEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 154 iepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqce 205
                         i++++ng+s vtwvehv++++++  h l++ ++ +g+a ga +w   lqr  e
  Phvul.006G126500.1 393 IQELPNGYSMVTWVEHVEVDDKIQiHPLYKDIIAKGIAYGAERWIMELQRISE 445
                         **********************988********************99998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.04E-16782IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-181284IPR009057Homeodomain-like
PROSITE profilePS5007115.9692282IPR001356Homeobox domain
SMARTSM003895.1E-172486IPR001356Homeobox domain
PfamPF000461.7E-142780IPR001356Homeobox domain
CDDcd000861.03E-163083No hitNo description
PROSITE patternPS0002705780IPR017970Homeobox, conserved site
PROSITE profilePS5084842.515215449IPR002913START domain
SuperFamilySSF559614.67E-29217447No hitNo description
CDDcd088755.13E-95219445No hitNo description
SMARTSM002347.4E-31224446IPR002913START domain
PfamPF018521.1E-32225445IPR002913START domain
Gene3DG3DSA:3.30.530.209.8E-6278411IPR023393START-like domain
SuperFamilySSF559617.28E-11475699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MASSMASAGG SGDDEGSQNL NNGRKNSYKR LTSSQTARLE RFIKDCPHPD EAQRRQLAAE  60
IGLEPRQIKF WFQNKRTQIK NQHERADNTA LRVENDRIHT ENVTMQEALK SMLCPSCGGP  120
PCLEGDREHS IHNMKIENIH LKEEHEKVSR LLSRYLESQM LPPDQFQQGF FPIIGSSSNA  180
SHGNPMNQVI GASSSHDPNL ALQMMDGGYN VYASEGIEKN LMAKVAATAM DELIRLLRIN  240
EPFWIKSSTQ DGKLYLLLEN YQKMFPKTKH FKGPNVRIEA TKESGIVSIN SLQLVDMFLD  300
SNKWVNLFPT IVSKAETLKV LERGSAGNRS GALQLMSEQM HVLSPFVQPR EFQFLRFCQQ  360
IEEGLVIADV SFDSFQQKSS IFHSWKYPSG CLIQELPNGY SMVTWVEHVE VDDKIQIHPL  420
YKDIIAKGIA YGAERWIMEL QRISERFAAF YIEKIPDHDT AGVINSLEGR RSIMNFAHRM  480
LKIFCESITM ADGLDFPLSD LANTSGVRVS IRESKMIGQP SGMIVAAATS IWLPLHYMKI  540
FEFFSDDKNR AQWDVLTCGN QSHKVAHISN GIHPGNCVSI IRPFIPSENN ALILQESFTT  600
PMGTYVIYAP TDVATMTSAI MGEDSSMLPV LPSGFVISPE GDPNAALGAF DCSDGERLGG  660
SLLTVAFQIL ASADGRNMPN RKAGAAVNSL LTSTILRVKD ALNCNNLE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G126500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147460.10.0hypothetical protein PHAVU_006G126500g
TrEMBLV7BN830.0V7BN83_PHAVU; Uncharacterized protein
STRINGXP_007147460.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11