PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G123700.2
Common NamePHAVU_006G123700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 300aa    MW: 33067.9 Da    PI: 10.315
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G123700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.62.1e-11556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w+++
  Phvul.006G123700.2  5 KQKWTAEEEAALKAGVIKHGVGKWRTILKDPEfnsvlYLRSNVDLKDKWRNL 56
                        79***********************************88***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.924158IPR017930Myb domain
SuperFamilySSF466894.71E-16271IPR009057Homeodomain-like
SMARTSM007173.2E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-13556IPR009057Homeodomain-like
PfamPF002496.6E-8556IPR001005SANT/Myb domain
CDDcd116602.45E-18656No hitNo description
SMARTSM005261.3E-11118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.99E-16118197IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-13119191IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.654120188IPR005818Linker histone H1/H5, domain H15
PfamPF005388.9E-8123181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV IKHGVGKWRT ILKDPEFNSV LYLRSNVDLK DKWRNLSVMA  60
NGWSSREKSR LAVRRVHHTP KQDEHSMSIT PVAPSDEDIV DVKPLQISRD TLQILGPKRS  120
NLSLDKLIME AITSLKENGG SNKTAIAAFI EDQYWALPDL KRMLSAKLKF LTASGKLIKV  180
NRKYRIAPTA AYSDRRRNSS MLFLDGRQKG SMKMDKDETN ILTKSQIDLE LAKIRSMTPQ  240
EAAAFAARAV AEAEAAIAEA EEAAKEAEAA EADAEAAQAF ADATTKSGKG RKSPRRIHA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G123700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983180.0BT098318.1 Soybean clone JCVI-FLGm-23G7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147427.10.0hypothetical protein PHAVU_006G123700g
RefseqXP_007147428.10.0hypothetical protein PHAVU_006G123700g
RefseqXP_007147429.10.0hypothetical protein PHAVU_006G123700g
SwissprotQ8VWK48e-97TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLV7BN930.0V7BN93_PHAVU; Uncharacterized protein
STRINGXP_007147427.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.38e-98telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]