PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

HD-ZIP

Protein Properties

Length: 235aa MW: 26838 Da PI: 6.7797

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G116000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.6e-18	21	75	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +f++ q++ Le++Fe ++ + +++ e A++lgL+ rqV +WFqN+Ra++k Phvul.006G116000.1 21 KNKKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWK 75 67789*************************************************9 PP
2	HD-ZIP_I/II	113.1	1.7e-36	22	112	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+r+s+ qvk+LE++Fe++++Lep +K e+areLglqprqva+WFqn+RAR+k+kq+ +dy+ L+++y++l ++ ++L+k+ +++ +l+ Phvul.006G116000.1 22 NKKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWKLKQIQRDYTILRANYKTLDSQFHALNKDYQSMLIQLQ 112 79*********************************************************************************99988877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.13E-18	6	78	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-19	8	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.572	17	77	IPR001356	Homeobox domain
SMART	SM00389	2.1E-16	19	81	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-15	21	75	IPR001356	Homeobox domain
CDD	cd00086	1.20E-13	26	78	No hit	No description
PRINTS	PR00031	1.3E-5	48	57	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	52	75	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	57	73	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.0E-9	77	119	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MSDLMEYSHS SNAGTRKKRS KNKKRFSDGQ VKSLESMFET DSRLEPAKKL EVARELGLQP 60 RQVAIWFQNK RARWKLKQIQ RDYTILRANY KTLDSQFHAL NKDYQSMLIQ LQNMKNRLQK 120 PLEQTESCST GYKAANSMES EAGNGEAIKR EQEIKQPSST TGRSEDIVCG GISECDSSIK 180 AKQNFGVEDE PSLLNFVENT DGSLTTSEHW GLLESEDILG QLSSCDYQWW DFWS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	23	KRSKNKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G116000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	1e-132	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007147343.1	1e-175	hypothetical protein PHAVU_006G116000g
TrEMBL	V7BN12	1e-174	V7BN12_PHAVU; Uncharacterized protein
STRING	XP_007147343.1	1e-174	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5635	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	3e-50	homeobox 7

Link Out ? help Back to Top
Phytozome	Phvul.006G116000.1
Entrez Gene	18628516