 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Phvul.006G114900.1 |
| Common Name | PHAVU_006G114900g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
| Family |
Dof |
| Protein Properties |
Length: 255aa MW: 27741.9 Da PI: 8.5537 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.006G114900.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 125.4 | 1.8e-39 | 20 | 80 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
++++l+cprC stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk++
Phvul.006G114900.1 20 PQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKAT 80
6899******************************************************976 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009639 | Biological Process | response to red or far red light |
| GO:0009845 | Biological Process | seed germination |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 255 aa
Download sequence Send
to blast |
MEEIGPNSCA QASLEKKARP QEQLNCPRCS STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60
GGSLRNVPVG GGSRKNKKAT SSKVPDLNPP SLSSVSAISS QNPKMQGVHD LNLAFPAAMD 120
KYHGMSPYGE MPKLEIGGEN NTGHHHSPSS LSPPYGMVSR GLNPYAPNPF MTSSDSLYTP 180
NYPMQEIKPN LSFSVDGFGN RSHGVQENGG GGRLLFPFGD IKHLSAGVEV EHNKEQGNNP 240
TGYWTGIIGE GSSW*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
