PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G114700.1 | ||||||||
Common Name | PHAVU_006G114700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 19326.1 Da PI: 5.0512 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.4 | 1.3e-39 | 16 | 114 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaC++lrr+C ++Cvlapyfp ++ ++fa+vh++FGasnv+++++ ++e++reda++s+vyeA ar+rdPvyG++g i +lq+ +e++k Phvul.006G114700.1 16 PCAACRMLRRRCDSKCVLAPYFPTNEVENFAVVHRVFGASNVVRMIQMVEETKREDAVKSMVYEATARLRDPVYGSAGSIYELQKMIEEVK 106 7****************************************************************************************** PP DUF260 92 aelallke 99 a+l+++k+ Phvul.006G114700.1 107 AQLDSIKT 114 **998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.416 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.7E-40 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MGFRADEAKP SMQHQPCAAC RMLRRRCDSK CVLAPYFPTN EVENFAVVHR VFGASNVVRM 60 IQMVEETKRE DAVKSMVYEA TARLRDPVYG SAGSIYELQK MIEEVKAQLD SIKTRVSEMQ 120 EQKEQLLSIS GNYNPLFGVN DPMFDSPMAS DPFEFPLEGG WVYTNIPAPS C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-33 | 16 | 116 | 11 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-33 | 16 | 116 | 11 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G114700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 2e-70 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007147329.1 | 1e-127 | hypothetical protein PHAVU_006G114700g | ||||
Swissprot | Q9SK08 | 1e-42 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | V7BQN1 | 1e-125 | V7BQN1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007147329.1 | 1e-126 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14068 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 6e-45 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G114700.1 |
Entrez Gene | 18628503 |