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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.006G114700.1 |
Common Name | PHAVU_006G114700g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
LBD |
Protein Properties |
Length: 172aa MW: 19326.1 Da PI: 5.0512 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.006G114700.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 126.4 | 1.3e-39 | 16 | 114 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
+CaaC++lrr+C ++Cvlapyfp ++ ++fa+vh++FGasnv+++++ ++e++reda++s+vyeA ar+rdPvyG++g i +lq+ +e++k
Phvul.006G114700.1 16 PCAACRMLRRRCDSKCVLAPYFPTNEVENFAVVHRVFGASNVVRMIQMVEETKREDAVKSMVYEATARLRDPVYGSAGSIYELQKMIEEVK 106
7****************************************************************************************** PP
DUF260 92 aelallke 99
a+l+++k+
Phvul.006G114700.1 107 AQLDSIKT 114
**998875 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 172 aa
Download sequence Send
to blast |
MGFRADEAKP SMQHQPCAAC RMLRRRCDSK CVLAPYFPTN EVENFAVVHR VFGASNVVRM 60 IQMVEETKRE DAVKSMVYEA TARLRDPVYG SAGSIYELQK MIEEVKAQLD SIKTRVSEMQ 120 EQKEQLLSIS GNYNPLFGVN DPMFDSPMAS DPFEFPLEGG WVYTNIPAPS C*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015038 | 2e-70 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |