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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.006G114000.1 |
Common Name | PHAVU_006G114000g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
bHLH |
Protein Properties |
Length: 616aa MW: 67649.1 Da PI: 5.8783 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.006G114000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 41.5 | 2.4e-13 | 442 | 488 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+h e+Er+RR+++N++f Lr+++P+ + K++Ka+ L A+ YI++Lq
Phvul.006G114000.1 442 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAIAYINELQ 488
799***********************66......******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 616 aa
Download sequence Send
to blast |
MKVDAGLGSV AWDEEDKAIV GAVLGGLALE FLTTNSVSNE SVLMAVGSDE GLQNKLSDLV 60 ERPNDSNFSW NYAIFWQLSQ SKSGDWVLSW GDGCCREPNE EEEGALRGKL RLLRVDEEMQ 120 QRMRKVVLQK LHNTFGGSEE DNYAFGLDHV TDTEMFFLAS MYFSFPRGHG VPGTCFVSGK 180 HLWLKSVPDF CVRSSLVKSA GIQTIVMVPT DLGVVELGSV RVLPENFELV QAVKSVFSTQ 240 CSQYPGVNVS AGGNAVFTGL AIGDGNKIDG GVPIPKLFSN PIGNRTGNRT HFREKLAVRK 300 MEDNRPWAGH ALPNGNNLNN NPNVRNGLHV PGWAVNSGVK QGGPVEIFAP RASTSSVVAE 360 LVNGVRQDFR LGNSYQPQRQ VQMQIDFSGA TSRPSHVRPV VVDSELSDVE ASCKEEQPSV 420 LDERKPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRSVVPNISK MDKASLLGDA 480 IAYINELQAK VKIMEDERER FGSSSKDGSV LEDNSRSENQ NQEKEAPDVD IQAAQDEVTV 540 KVSCPFDTHP VSKVIETLKE AKISVVESKF AAANDTVFHT FVIKSEGSEQ LTKEKLIAVF 600 SKPEPNPLQP LSSVA*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 3e-29 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 3e-29 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 3e-29 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 3e-29 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 3e-29 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 3e-29 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 3e-29 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 3e-29 | 436 | 498 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 423 | 431 | RKPRKRGRK |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |