PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G106800.1
Common NamePHAVU_006G106800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Whirly
Protein Properties Length: 244aa    MW: 27088.7 Da    PI: 9.8385
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G106800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly191.31.5e-59682032137
              Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92 
                         vyk+kaa+++ + +ptf++ldsg+++++r+G+++++++ +++erkydWek+q+falsate+++l+ ++s++s+effhdp++ +sn+G+vrk
  Phvul.006G106800.1  68 VYKGKAAFSLSPCLPTFTKLDSGTVVVDRRGSMMITFMHSIGERKYDWEKRQRFALSATEIGSLITMGSQDSSEFFHDPSMLSSNAGQVRK 158
                         9****************************************************************************************** PP

              Whirly  93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                         +l+++P ++  G+fv+l+v n+l++++++fsvPv+ aefav++++
  Phvul.006G106800.1 159 SLSIKPNANSNGYFVSLTVVNNLLNTKDYFSVPVTTAEFAVMKTA 203
                         *******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.8E-7355222IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.41E-6259221IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.4E-5768202IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MFKLSRVLHL TTTSRHRLLE VFSSRNVEVG DSLRDRRDFT YSAGISTATN NYAAKGYASD  60
RIFAPYTVYK GKAAFSLSPC LPTFTKLDSG TVVVDRRGSM MITFMHSIGE RKYDWEKRQR  120
FALSATEIGS LITMGSQDSS EFFHDPSMLS SNAGQVRKSL SIKPNANSNG YFVSLTVVNN  180
LLNTKDYFSV PVTTAEFAVM KTACSFALPH IMGWDQITNQ QSRGTVGLQQ KGGSQVLDLE  240
WEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A9e-89532202169StWhy2
3n1i_A9e-89532202169protein StWhy2
3n1j_A9e-89532202169Protein StWhy2
3n1k_A9e-89532202169protein StWhy2
3n1l_A9e-89532202169protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G106800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0921460.0BT092146.1 Soybean clone JCVI-FLGm-10O7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147230.10.0hypothetical protein PHAVU_006G106800g
SwissprotD9J0341e-93WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLV7BML40.0V7BML4_PHAVU; Uncharacterized protein
STRINGXP_007147230.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.14e-91WHIRLY 2