PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G100300.1
Common NamePHAVU_006G100300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 569aa    MW: 64796.8 Da    PI: 6.6644
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G100300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.17.3e-16100172286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt++e laL+++r++me+++ +       W++vs+k++e gf++s+++Ckek+e+ ++++ +i +  k+       ++++f++le
  Phvul.006G100300.1 100 WTNDELLALLRIRSSMENWFPEH-----TWDHVSRKLAELGFKKSAEKCKEKFEDESRYFDNISNYGKN-------NYRFFSELE 172
                         ********************987.....9*******************************999888776.......467777776 PP
2trihelix96.23.1e-30435522185
            trihelix   1 rWtkqevlaLiearr....emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                         rW+++evlaLi++r     + +++ ++g+ k+plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql
  Phvul.006G100300.1 435 RWPRDEVLALINLRCtsvsNNNNEEKEGSNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLNSRTCPYFHQL 522
                         8************9744435555555789*********************************************8.89999*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-1198174No hitNo description
PROSITE profilePS500906.20299151IPR017877Myb-like domain
PfamPF138372.2E-20434522No hitNo description
CDDcd122032.19E-25434503No hitNo description
PROSITE profilePS500906.26435496IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MFDGAAPDQF HQFISPRTTL PLHLSFPLHA SSTPSTTFLP FHHPHNVPSQ SPHHFPLQPN  60
LFHPILHPPS PTHKHQPPHK LASIHIQTDP TQLPDLTDSW TNDELLALLR IRSSMENWFP  120
EHTWDHVSRK LAELGFKKSA EKCKEKFEDE SRYFDNISNY GKNNYRFFSE LEELCQNPDP  180
SGGGGGDCDG DDGIVRSEET LHLGGDNMGH QQCDRTEDKV VVEKSKQRKR KRRDRFEMFK  240
GFCESVVNKM MAQQEEIHNR LLEDMVKRDQ EKFTREEAWK KQEMERMNKE LEIMAQEQAI  300
AGDRHATIIE FLKKCATTPS PPTQNGKHYS TDGSNLPNRS LHTQNPNTPS NEDNNNLDPT  360
PSPKMLLNHD QTKLQAENPS SSDTLLQVPS SSNSSPTPHN PSSSLNSHNN MIPLESNSVS  420
IRASSENSKE DVGRRWPRDE VLALINLRCT SVSNNNNEEK EGSNKGPLWE RISQGMSELG  480
YKRSAKRCKE KWENINKYFR KTKDVNKKRS LNSRTCPYFH QLSCLYGQGK IVSQSEREGN  540
YMSPTTNSGQ MPPDDDEEVE ADESSHVG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226232QRKRKRR
2227232RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G100300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147154.10.0hypothetical protein PHAVU_006G100300g
SwissprotQ8H1811e-74GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLV7BQ630.0V7BQ63_PHAVU; Uncharacterized protein
STRINGXP_007147154.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.13e-71Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]