PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G093200.1 | ||||||||
Common Name | PHAVU_006G093200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NF-YC | ||||||||
Protein Properties | Length: 291aa MW: 32227.3 Da PI: 6.5052 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.1 | 1.8e-55 | 109 | 212 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 ql++fw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi Phvul.006G093200.1 109 QLQQFWSSQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 199 89*****998899****************************************************************************** PP NF-YC 89 fdflvdivprdel 101 fdflvdivpr++l Phvul.006G093200.1 200 FDFLVDIVPREDL 212 **********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.87E-33 | 102 | 203 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-21 | 131 | 194 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.3E-37 | 132 | 209 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
HSFCFRTSLS EVLDYQCLGS ATSSLGEGNK MDHQGHGQNP SMGVVGSGAQ LTYGSNPYQQ 60 GQLTGPPGSV VTSVGTIQSS GQPAGAQLGQ HQLAYQHIHQ QQQHQLQQQL QQFWSSQYQE 120 IEKVTDFKNH SLPLARIKKI MKADEDVRMI SAEAPVIFAR ACEMFILELT LRSWNHTEEN 180 KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDEVLASI PRGTMPVGGP PDALPYCYMQ 240 PQHAPQVGTA GVIMGKPVMD PNMYAQQSHP YMAPQMWPQP PDQRQPSPEH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-62 | 116 | 209 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 187 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G093200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ913690 | 0.0 | GQ913690.1 Phaseolus vulgaris nuclear factor Y subunit C mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007147065.1 | 0.0 | hypothetical protein PHAVU_006G093200g, partial | ||||
Swissprot | Q8L4B2 | 1e-83 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | V7BM39 | 0.0 | V7BM39_PHAVU; Uncharacterized protein (Fragment) | ||||
STRING | XP_007147065.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 3e-82 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G093200.1 |
Entrez Gene | 18628275 |