PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G087000.1 | ||||||||
Common Name | PHAVU_006G087000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 672aa MW: 76384.2 Da PI: 5.6499 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.8 | 1.5e-55 | 8 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv++yL++k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd Phvul.006G087000.1 8 LPPGFRFHPTDEELVSYYLRRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKD 97 79****************************.99***************6434445667********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v s ++ ++g+kktLv+y+grap+g +t Wvmheyrl Phvul.006G087000.1 98 RKVNS-QNCAIGMKKTLVYYRGRAPHGCRTGWVMHEYRL 135 *****.8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-65 | 4 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.313 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-30 | 9 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MNMAPVSLPP GFRFHPTDEE LVSYYLRRKI NGRKIELEII PEVDLYKCEP WDLPGKSLLP 60 GKDLEWYFFS PRDRKYPNGS RTNRATKSGY WKATGKDRKV NSQNCAIGMK KTLVYYRGRA 120 PHGCRTGWVM HEYRLDETQC ETNTGLQDAY ALCRVFKKTA VIPPKVGDQH YVNVSTSHAN 180 QIIASDQSSS INELYSEGRG EVLESSNYFM SMDTSPNING TAFNINGGRR DNETAWSHFL 240 SEDLLNLPTA STSSFPNYGS MSYPPSKVDV ALECARMQHR FSMPPLQMQD LDFPQVGISK 300 LKMEQGSSSM SGSRNETDIL QEILSVAHAS QELINQSNYS SQPFMNANEN YAPHETDFTF 360 MVGTNYNHVN DMNTMNMGFV DKAWEDKNTR SIEIGDLDDG FKTERMMENL RWVGMSSKNV 420 EKSFMEEQQN IVPIDDISNF QTNTEENELK VGFEKHSCNK EITDTEIDDF SMGFMNDEDP 480 NENFLNEENI DYSNSTNYDV VEETKTNHAM FVSTHQVADT FFHQIAPSQT VKVQLNPVMA 540 ANQCIEKATV KKGPSFFRKF KACVTGKLIK PSNTVASVLE FIFAFLLMHC VFLKGLVEDW 600 KPDLKRCGCV YSMKNMGEAT ESVPRNEQEK VWFVGIRYGK GFSMVLKKIS IFLTISLALF 660 TMWANHIIVD S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-55 | 4 | 158 | 11 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G087000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007146987.1 | 0.0 | hypothetical protein PHAVU_006G087000g | ||||
TrEMBL | V7BQX8 | 0.0 | V7BQX8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007146987.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4421 | 34 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-163 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G087000.1 |
Entrez Gene | 18628213 |