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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Phvul.006G086700.1 |
| Common Name | PHAVU_006G086700g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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| Family |
MYB_related |
| Protein Properties |
Length: 362aa MW: 39798.6 Da PI: 7.298 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.006G086700.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 60 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r rWT eE++++++a k++G W++I +++g ++t+ q++s+ qk+
Phvul.006G086700.1 60 RERWTDEEHKKFLEALKLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 104
78******************88.*********.************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 362 aa
Download sequence Send
to blast |
MAIRDQSEFY RSPGGPSVGS GVSLSSGVHS VTHIQLNEQF SCGSDYALKV RKPYTITKQR 60
ERWTDEEHKK FLEALKLHGR AWRRIEEHVG TKTAVQIRSH AQKFFSKVLR DPTGSVTNTA 120
DSIEIPPPRP KRKPMHPYPR KLVETPNKET SIPEQLMKSS SLKSSDFDQE NQSPKSVLSG 180
AGSDSLSSSD SDTPNESLSP MSSISDIHTS DFTCAEPNTT SEEAGINADS SHDEKPLMKF 240
KLPTDESLCM KEDTTEESSS QTFKLFGITL FVTDPCKPSS PTIEACKPIP LNKRKGGGRL 300
ELLGHITPSE TSAISLLKVR VGPEACGKGF VPYERCMAGR ENKSSSVTND NREEQCIHLS 360
L*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KT031199 | 0.0 | KT031199.1 Glycine max clone HN_CCL_153 MYB/HD-like transcription factor (Glyma11g33180.1) mRNA, partial cds. |
