PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G078200.1
Common NamePHAVU_006G078200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 474aa    MW: 53247 Da    PI: 6.5263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G078200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45e-11422471147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         + rW+  E+e l  +vk++G g+W+tI +       +R++ ++k++w++ 
  Phvul.006G078200.1 422 KRRWSSLEEETLRAGVKMFGEGNWATIRSFYSnifDNRSGVDLKDKWRNM 471
                         579*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.051417473IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-13417473IPR009057Homeodomain-like
SuperFamilySSF466892.11E-14419472IPR009057Homeodomain-like
SMARTSM007172.4E-6421473IPR001005SANT/Myb domain
PfamPF002492.1E-8422471IPR001005SANT/Myb domain
CDDcd116606.74E-15429473No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDSDISRWVM EFLLRSSVPD SLIQKTLIVL PLSGADSRLK KTLLLRILRT LLLKASLSET  60
ALQILELLED LDGASASAVR RRAYLAVAVE CTVKYLAAAP DDADGEFSGA VNRIWRGRVA  120
ALEARRSGLV SGELARWRDD LEAALGDSRA CERLADLNSR REAMNEVRAY LKEAWESMGP  180
SFLESVAAMS KGLTKEKDDF VVSGNKRDND HENDNDACME DVAMHDENQG KQQLEEKIDA  240
NQEVGGRDLL LESDKVIQKQ NLRVKHKHSA LRACHRGVKI SGSEEVESAK SWSKHDSVPS  300
EIRKVRESLK SSTCELRALV NDPLPDALRL SEVVRSKLAT SDTNIEPPTE NQSSHIDVPD  360
PDVCQSIVPF QPNDAHLREK SSVHCSNIHQ PNLIERNRSA RTIEWDDSID NSPLARQSRR  420
RKRRWSSLEE ETLRAGVKMF GEGNWATIRS FYSNIFDNRS GVDLKDKWRN MIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G078200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146880.10.0hypothetical protein PHAVU_006G078200g
TrEMBLV7BLL50.0V7BLL5_PHAVU; Uncharacterized protein
STRINGXP_007146880.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.14e-15TRF-like 5