PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.006G078100.1

Common Name

PHAVU_006G078100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

M-type_MADS

Protein Properties

Length: 245aa MW: 28059.6 Da PI: 8.6245

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G078100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60	2.9e-19	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +ien+s r++t+ kR++g+lKK eELS+LC+++++ i+++++++ Phvul.006G078100.1 10 FIENDSARKTTYKKRKKGVLKKIEELSTLCGIDACAIVYGPDDH 53 8****************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.4	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-23	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.03E-24	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-17	10	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-7	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MTRRKVKFAF IENDSARKTT YKKRKKGVLK KIEELSTLCG IDACAIVYGP DDHEAEVWPS 60 HCGVQRVVER FRNMPAVEKI KKMVNQESFI GQRIQKGNEQ MMKLMKDNAE KELTLFMFQC 120 LTEGRVLPDE NNMTFADLNV LSSVIEQNLK DIGKRLQTLN VNKIQPNQQP QMQTSVFQPQ 180 LKTASYQPHL QMTLMSSGHG LDMDVNPMQR LLFMDLLNGD RDETIMPPFG DPNLQFWPNL 240 GLLP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RRKVKFAFIENDSARKTTYKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G078100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007146879.1	0.0	hypothetical protein PHAVU_006G078100g
Swissprot	Q9FJK3	9e-45	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	V7BPB2	0.0	V7BPB2_PHAVU; Uncharacterized protein
STRING	XP_007146879.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19462	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	4e-47	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Phvul.006G078100.1
Entrez Gene	18628118

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]