![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.006G077700.1 | ||||||||
Common Name | PHAVU_006G077700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 238aa MW: 26567.3 Da PI: 7.959 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.8 | 2.2e-16 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i +s+r+ tf kR+ng++KK E+S+LC+++++ ii+s++ Phvul.006G077700.1 10 FITKTSKRKATFKKRKNGLIKKIGEISILCGIQACAIIYSPD 51 68899***********************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-17 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.862 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.34E-28 | 2 | 84 | No hit | No description |
SuperFamily | SSF55455 | 3.66E-22 | 3 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.2E-16 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MARKKVDLTF ITKTSKRKAT FKKRKNGLIK KIGEISILCG IQACAIIYSP DEPDQPEVWP 60 SEEGVESAIS RFRSVSELEQ SKKMFCQESF LRQRIVKVQE QLKKVRNENR KKEIGHLISQ 120 YITVGNNLES ANIIDLNDIS FLADQCLEDI TKKISARKAQ MVTPVAENGG QTMTHGGQTV 180 THGEQAQVNH VQGPYTDVDA MQNMNWSSDI INAGAANDML ALEDVNVQSG WLNQYIP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 24 | RKKVDLTFITKTSKRKATFKKRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.006G077700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-161 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007146875.1 | 1e-178 | hypothetical protein PHAVU_006G077700g | ||||
TrEMBL | V7BLL0 | 1e-177 | V7BLL0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007146875.1 | 1e-177 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-41 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.006G077700.1 |
Entrez Gene | 18628114 |