PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G074600.1
Common NamePHAVU_006G074600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 538aa    MW: 59231.8 Da    PI: 7.3193
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G074600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.3e-33216273260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Phvul.006G074600.1 216 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 273
                         8****************************************.***************85 PP
2WRKY106.91e-33377435159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Phvul.006G074600.1 377 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFPGCPVRKHVERASHDLRAVITTYEGKHNHD 435
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-28209274IPR003657WRKY domain
SuperFamilySSF1182901.44E-25214274IPR003657WRKY domain
SMARTSM007741.3E-36215273IPR003657WRKY domain
PfamPF031061.1E-25216272IPR003657WRKY domain
PROSITE profilePS5081123.824216274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37362437IPR003657WRKY domain
SuperFamilySSF1182901.7E-29369437IPR003657WRKY domain
PROSITE profilePS5081138.033372437IPR003657WRKY domain
SMARTSM007741.5E-39377436IPR003657WRKY domain
PfamPF031067.5E-26378435IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MTTSFSDLLS SPTDHNLRGS ERPQEVSDQT GSSGVPKFKS TPPPSLPFFH PQNHPLPPIS  60
PISPSYFNIP HGLSLAELLD SPVLLHSSNV LASPTTESFA TGHGFNWKSS YGESQHHVKE  120
EDKSFSSFSF QTQTQIPLAS STGFQSSTGI VQSGWSFPET VKQDGFSSRM SMNMVKTETS  180
SAMQGFNSEN NRNSAGFQSD YNNYQPQVQT LSRRSDDGYN WRKYGQKQVK GSENPRSYYK  240
CTYPNCPTKK KVERSLDGQI TEIVYKGSHN HPKPQATKRN SLSASSLAIS HSNGVNNEIT  300
QAPHQMDSVA TPENSSISME DDDFGQSKSG GDEFDNNEPD AKRWRIEGEN EGISAVGSRT  360
VREPRVVVQT TSDIDILDDG YRWRKYGQKV VKGNPNPRSY YKCTFPGCPV RKHVERASHD  420
LRAVITTYEG KHNHDVPAAR GSGSNSIGRS VPINTTTNST TSAATSIYIN SHQNLRPAAP  480
ERTQHFNSNM QQGSGSFGFS GFGNPLMGSY MNQQSDNVFT SRAKEEPDDS FLDSLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37208438878Probable WRKY transcription factor 4
2lex_A2e-37208438878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G074600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195910.0EU019591.1 Glycine max WRKY62 (WRKY62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146842.10.0hypothetical protein PHAVU_006G074600g
SwissprotQ6B6R41e-135WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLV7BQI20.0V7BQI2_PHAVU; Uncharacterized protein
STRINGXP_007146842.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-105WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]