PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G053300.1
Common NamePHAVU_006G053300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 582aa    MW: 63005.5 Da    PI: 6.7282
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G053300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1016.9e-32227284260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Phvul.006G053300.1 227 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 284
                         8****************************************.***************85 PP
2WRKY105.72.4e-33399457159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Phvul.006G053300.1 399 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHD 457
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.629221285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-27223285IPR003657WRKY domain
SuperFamilySSF1182903.92E-25223285IPR003657WRKY domain
SMARTSM007744.1E-34226284IPR003657WRKY domain
PfamPF031061.7E-24227283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37384459IPR003657WRKY domain
SuperFamilySSF1182902.35E-29391459IPR003657WRKY domain
PROSITE profilePS5081138.664394459IPR003657WRKY domain
SMARTSM007743.5E-39399458IPR003657WRKY domain
PfamPF031064.4E-26400457IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MDAGEAHSDD PNRPGSRPNS TAEPAPAGGG GARYKLMSPA KLPISRSPCV TIPPGLSPTS  60
FLESPVLLSN MKVEPSPTTG SLFMLHQSAH ASVTSAASAS FPVTSACFNT NTVDDRKPSF  120
FEFKPHSRSN MVPADPDNHA SEKCTQIDGQ GKGQPFDSSL VKSEIAVPSN ELSLSSPVQI  180
VSSGANARVE GDLDELNPRS NIATGLQTSQ VDNRGSGLSV APERVSDDGY NWRKYGQKHV  240
KGSEFPRSYY KCTHPNCEVK KLFERSHDGQ ITEIIYKGTH DHPKPQPNRR YSTGSMMTMQ  300
EDRSDKASFR DDKGSNICGQ VSHPAEPDST PELSPVATND GDPEGTGFLS NRNNDEVDDD  360
DPFSKRRKME LANADITPVV KPIREPRVVV QTLSEVDILD DGYRWRKYGQ KVVRGNPNPR  420
SYYKCTNTGC PVRKHVERAS HDPKAVITTY EGKHNHDVPT ARNNSCHDIA GPASAAGGQT  480
RIRPEESDTI SLDLGMGISP VSENTPSSQG RMMLSEFGDS QAHTSNSNFK FVHTSGPPVY  540
FGVLNNNSNP YGSRENPSDS ASLNHSAYPC PQNVGRILMG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36227459877Probable WRKY transcription factor 4
2lex_A1e-36227459877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G053300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5203900.0KM520390.1 Macrotyloma uniflorum WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146592.10.0hypothetical protein PHAVU_006G053300g
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLV7BPS80.0V7BPS8_PHAVU; Uncharacterized protein
STRINGXP_007146592.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein