PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G045300.1
Common NamePHAVU_006G045300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 513aa    MW: 56908 Da    PI: 6.0218
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G045300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-174390148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WTt Ed  l+d+v+++G g+W+++ +  g++R++k+c++rw ++l
  Phvul.006G045300.1 43 KGPWTTAEDAVLIDYVTKHGEGNWNAVQKNTGLNRCGKSCRLRWANHL 90
                        79******************************************9986 PP
2Myb_DNA-binding51.91.7e-1696139146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++++eE++l++d++ q+G++ W++ a+ ++ gRt++++k++w++
  Phvul.006G045300.1  96 KGAFSPEEEKLIIDLHSQFGNK-WARMAALLP-GRTDNEIKNYWNT 139
                         799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3793890IPR017930Myb domain
SuperFamilySSF466892.55E-3041137IPR009057Homeodomain-like
SMARTSM007177.4E-144292IPR001005SANT/Myb domain
PfamPF002495.7E-154390IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-234497IPR009057Homeodomain-like
CDDcd001671.74E-104590No hitNo description
PROSITE profilePS5129424.53691145IPR017930Myb domain
SMARTSM007171.1E-1595143IPR001005SANT/Myb domain
PfamPF002496.5E-1596139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2598144IPR009057Homeodomain-like
CDDcd001671.63E-1198139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MEGMASSNDV ANGENGLLVM IGGDNEFRGG EGGGNVEEVA LKKGPWTTAE DAVLIDYVTK  60
HGEGNWNAVQ KNTGLNRCGK SCRLRWANHL RPNLKKGAFS PEEEKLIIDL HSQFGNKWAR  120
MAALLPGRTD NEIKNYWNTR IKRRQRQGLP LYSEEHDNHC STTPTLSPCL TQTASSPNNT  180
LTNYEFFNQN HHLQHYQQQQ QQNHHQQHQP LSPSAPHHSP LSSPLQHRQS FTSSSPLNFL  240
DHSPLPLSSS SPSPLSFTFQ RPEPVLCTPL RFKRYRASPS YNPLPDLPLT NQFPHLDGFR  300
FPVSSGFSPF FQPSFLESDL GISSSSPFQP KLELPSNQFY KPPQEQDIKL DIDFSDPSFQ  360
TSSGLLGDLL LEAQALASGQ NSKKRTYLSL NEGNDMFDAC QSFEDFPSSS LYWPSSASAP  420
KAKEEAPDLS KFMNEDLSSL LTVIPSSNTQ GHEWLNNGVP EGSNVQPSGS GMTDDNFGVD  480
MKPVASLFPL TNTTNHNENQ GCYTWDNLPG LC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-31411445107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G045300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146493.10.0hypothetical protein PHAVU_006G045300g
TrEMBLV7BKJ60.0V7BKJ6_PHAVU; Uncharacterized protein
STRINGXP_007146493.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.25e-66myb domain protein 101