PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G029200.2 | ||||||||
Common Name | PHAVU_006G029200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bZIP | ||||||||
Protein Properties | Length: 291aa MW: 31530.6 Da PI: 5.2901 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.4 | 1e-15 | 210 | 271 | 1 | 62 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +ke+kr +r+ +NR++A+ R+RKka++ Le++vk Le++N++Lk++l++l++e + l++ Phvul.006G029200.2 210 DKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQI 271 689******************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 3.0E-28 | 2 | 88 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 6.89E-31 | 3 | 84 | No hit | No description |
Pfam | PF14569 | 1.2E-35 | 4 | 80 | IPR027934 | Cellulose synthase, RING-type zinc finger |
PROSITE profile | PS50089 | 9.214 | 14 | 60 | IPR001841 | Zinc finger, RING-type |
SMART | SM00338 | 5.0E-17 | 210 | 274 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.7E-14 | 211 | 272 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.702 | 212 | 275 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.4E-16 | 214 | 274 | No hit | No description |
SuperFamily | SSF57959 | 4.44E-13 | 214 | 272 | No hit | No description |
CDD | cd14704 | 1.06E-20 | 215 | 266 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 217 | 232 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003690 | Molecular Function | double-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MKSKPVKNLN GQICQICGDT IGLTATGDVF VACHECGLPL CHSCYEYELK NVSQSCPQCK 60 TRFTSHQEGA GVEGDDDDDE DADDLDNEIN YGQGNNSKAG MQWEEDADFS SSSGHDSQIP 120 NPHLANGQPM SGDIPCATSD AQSMQTTSGL MAAAKQPGPE SDEEIRRVPE IGGESAGTVA 180 SRPDARSNAG AERVQGTGEG QKKRGRSPAD KESKRLKRLL RNRVSAQQAR ERKKAYLIDL 240 ETRVKDLEKK NSELKERLST LQNENQMLRQ ILKNTTASRR GSNSGTNNAE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1weo_A | 1e-24 | 4 | 63 | 9 | 68 | cellulose synthase, catalytic subunit (IRX3) |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00117 | ampDAP | Transfer from AT5G11260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G029200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | SOYSTF1A | 0.0 | L28003.1 Glycine max TGACG-motif binding protein (STF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007146304.1 | 0.0 | hypothetical protein PHAVU_006G029200g | ||||
TrEMBL | V7BMN6 | 0.0 | V7BMN6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007146305.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11260.1 | 1e-55 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G029200.2 |
Entrez Gene | 18627608 |