PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G020000.1
Common NamePHAVU_006G020000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 468aa    MW: 51857.6 Da    PI: 7.7694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G020000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-0589111123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +C+k F++k  L  H+r+H
  Phvul.006G020000.1  89 HICCICKKEFPTKNALFGHMRSH 111
                         68********************9 PP
2zf-C2H212.70.00037375397123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ CgksF++   L  H ++H
  Phvul.006G020000.1 375 YKCSACGKSFKTFQGLGGHRSVH 397
                         9***********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.9742754IPR007087Zinc finger, C2H2
SMARTSM00355172749IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-52949IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
PfamPF139128.9E-789113IPR007087Zinc finger, C2H2
SuperFamilySSF576678.73E-989111No hitNo description
PROSITE profilePS501579.14189111IPR007087Zinc finger, C2H2
SMARTSM003550.004289111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576678.73E-9370397No hitNo description
PfamPF139124.5E-7375399IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.78375402IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.8E-4375398IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.048375397IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280377397IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MKRSVLGSFK AELESVADEE NPSPKLSTCD ICFRSFSCGK ALGGHRRSHF MKQQQQKKVK  60
TRLTDNHSSK PGDSNIRVIC DFDDDDGKHI CCICKKEFPT KNALFGHMRS HPERPWRGVS  120
PPTQKNSSSP SSSSYYYSSS SSSLNSDSIE KNKEDHDVDD GCDGGDGVIA SHEHHTNLVD  180
LLRLTSPSWL RKDTRGRNSI GGYQAAETLF YMSSYSKYFC GEPNRVSPNK EQVQPKSAPA  240
LIKQRKRKIC QSSSSKKDMV KKIKFLFKGE LNLGNTSNGV GGCDGEANEL NRSKGLSESG  300
VEYNHEDEKK GMGESFDDLN AEMVTPTNKV QEHVGPSEVK KNMDKKGKNS KKTVLNSRTK  360
DSESEKASQE KTDWYKCSAC GKSFKTFQGL GGHRSVHKEK NTVSIDEPNP LEAVAEQNNS  420
SSSCNLSKME DPLFNEPTIP DQPCQSSGVK QLNFDLNELP CSMDEED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G020000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146189.10.0hypothetical protein PHAVU_006G020000g
TrEMBLV7BMD30.0V7BMD3_PHAVU; Uncharacterized protein
STRINGXP_007146189.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15181913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.14e-14C2H2 family protein