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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G005200.1 | ||||||||
Common Name | PHAVU_006G005200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | CO-like | ||||||||
Protein Properties | Length: 594aa MW: 65720.3 Da PI: 6.9177 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.8 | 3.3e-06 | 193 | 233 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Phvul.006G005200.1 193 ICDFCGDQRSMVYCRSDAAYLCLSCDRNVHSAnalsrrHSR 233 7*****************************65677777765 PP | |||||||
2 | zf-B_box | 20.4 | 1e-06 | 235 | 276 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C++++++++ C + + lC++C +H g H+++ Phvul.006G005200.1 235 LLCERCNSQPAFVRCVEEKISLCQNCDWLGH-GvstsstHKRQ 276 57****************************9.66778888876 PP | |||||||
3 | CCT | 59.9 | 8.3e-21 | 536 | 579 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+k RkFeK++rY+sRKa+A+ R RvKGrFvk+ Phvul.006G005200.1 536 RSNAVLRYKEKKKARKFEKQVRYASRKARADVRRRVKGRFVKAG 579 899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.082 | 189 | 236 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.5E-10 | 189 | 236 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.04E-6 | 193 | 236 | No hit | No description |
PROSITE profile | PS50119 | 8.887 | 232 | 278 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.26E-4 | 236 | 278 | No hit | No description |
SMART | SM00336 | 1 | 237 | 278 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.1E-15 | 536 | 578 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.11 | 536 | 578 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MAPLALYFFP LWFALFITFA YVTLPTHSLS LSLSHTHTPF ALFFFSFHIS STFIHLLSSY 60 SFLSPLLNTP HHTSLARAEA RREERETHTK SKREKGPFVL FKKFSSFYFQ DSFFAFKFCI 120 QIIFFFFFSE KATPFCLLIL FSLSSLPSAS ASSDRENFCF FRVYLGLSRL LLGGDSLIYS 180 KGQEKKSVKM GYICDFCGDQ RSMVYCRSDA AYLCLSCDRN VHSANALSRR HSRTLLCERC 240 NSQPAFVRCV EEKISLCQNC DWLGHGVSTS STHKRQAISC YSGCPSAAEL SSIWSFVLDI 300 PSIRESTCEQ ELGLMSINEN NKSVGVLPEN GNVSGSDQVT DLPSLDKSLV GTSSVPESSS 360 KPPAGPANEC LPKLYCPAAK CPALCEDDNL YDDFDMDEMD LNLENYEELF GVALSHSEEL 420 FENGGFNSLF GTKDMSAGDS SCQDAIAAEG SSVGLVNATQ PACSNAASAD SILSTKTEPV 480 LCLTGRQAQS NLSFSGITGE SSAADYQDCG ASSMLLRGEP PWFAPCPENS LQSANRSNAV 540 LRYKEKKKAR KFEKQVRYAS RKARADVRRR VKGRFVKAGD VYDYDPLSTT RSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G005200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007146011.1 | 0.0 | hypothetical protein PHAVU_006G005200g | ||||
Swissprot | Q9SSE5 | 1e-150 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | V7BLU2 | 0.0 | V7BLU2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007146011.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-130 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G005200.1 |
Entrez Gene | 18627354 |