PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bHLH

Protein Properties

Length: 429aa MW: 47187.4 Da PI: 6.1898

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G161900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.3	2.4e-07	333	373	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++++P K++ a++L +A +Y+k L Phvul.005G161900.1 333 ARERRERISERIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 373 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.665	324	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-13	330	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-12	330	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-11	332	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-4	334	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.70E-4	346	378	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MDGLSWDSSS QLVGNIPSLW SSHPQDLEGE YHHSLPHLFS SVLNQTGYPY PCSEKEREMV 60 HPSTSEIMSI LSQRTATMPV KSGAAGASWG EALTSQSCPS LSANMNQTSN YQTDFNTSHQ 120 QEHLINGIQN GKATCSLESL DCLLSDTKNG NTDTSIEDDG ISMMVLSDCT NLCNFNYGSA 180 VSSGESESNA SNARNSDMQY PSVNELDETV SQSFSDQYIS QARVIDSEVI CTKGSNSCFS 240 IAHNSFRLVS ETSPKSKRPR WDKHPGSSNI NFQQPNSSVS PSFEEPDPEA VAQMKEMIYR 300 AAAFRPVNLG LEVVEKPKRK NVKISTDPQT VAARERRERI SERIRVLQKI VPGGSKMDTA 360 SMLDEAANYL KFLRAQVKAL ENIGNKLQTV NSPPNIAFSF NPSFPIQTHF PLQNPSGHTH 420 IQHSKGWK*

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MDGLSWDSSS QLVGNIPSLW SSHPQDLEGE YHHSLPHLFS SVLNQTGYPY PCSEKEREMV  60
HPSTSEIMSI LSQRTATMPV KSGAAGASWG EALTSQSCPS LSANMNQTSN YQTDFNTSHQ  120
QEHLINGIQN GKATCSLESL DCLLSDTKNG NTDTSIEDDG ISMMVLSDCT NLCNFNYGSA  180
VSSGESESNA SNARNSDMQY PSVNELDETV SQSFSDQYIS QARVIDSEVI CTKGSNSCFS  240
IAHNSFRLVS ETSPKSKRPR WDKHPGSSNI NFQQPNSSVS PSFEEPDPEA VAQMKEMIYR  300
AAAFRPVNLG LEVVEKPKRK NVKISTDPQT VAARERRERI SERIRVLQKI VPGGSKMDTA  360
SMLDEAANYL KFLRAQVKAL ENIGNKLQTV NSPPNIAFSF NPSFPIQTHF PLQNPSGHTH  420
IQHSKGWK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G161900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007150551.1	0.0	hypothetical protein PHAVU_005G161900g
Swissprot	Q8S3D2	2e-77	BH087_ARATH; Transcription factor bHLH87
TrEMBL	V7BZR5	0.0	V7BZR5_PHAVU; Uncharacterized protein
STRING	XP_007150551.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-59	bHLH family protein

Link Out ? help Back to Top
Phytozome	Phvul.005G161900.1
Entrez Gene	18631264

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]