PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G161900.1
Common NamePHAVU_005G161900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 429aa    MW: 47187.4 Da    PI: 6.1898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G161900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.4e-07333373954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++++P        K++ a++L +A +Y+k L
  Phvul.005G161900.1 333 ARERRERISERIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 373
                         599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.665324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-13330388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-12330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-11332387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-4334373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-4346378No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDGLSWDSSS QLVGNIPSLW SSHPQDLEGE YHHSLPHLFS SVLNQTGYPY PCSEKEREMV  60
HPSTSEIMSI LSQRTATMPV KSGAAGASWG EALTSQSCPS LSANMNQTSN YQTDFNTSHQ  120
QEHLINGIQN GKATCSLESL DCLLSDTKNG NTDTSIEDDG ISMMVLSDCT NLCNFNYGSA  180
VSSGESESNA SNARNSDMQY PSVNELDETV SQSFSDQYIS QARVIDSEVI CTKGSNSCFS  240
IAHNSFRLVS ETSPKSKRPR WDKHPGSSNI NFQQPNSSVS PSFEEPDPEA VAQMKEMIYR  300
AAAFRPVNLG LEVVEKPKRK NVKISTDPQT VAARERRERI SERIRVLQKI VPGGSKMDTA  360
SMLDEAANYL KFLRAQVKAL ENIGNKLQTV NSPPNIAFSF NPSFPIQTHF PLQNPSGHTH  420
IQHSKGWK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G161900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150551.10.0hypothetical protein PHAVU_005G161900g
SwissprotQ8S3D22e-77BH087_ARATH; Transcription factor bHLH87
TrEMBLV7BZR50.0V7BZR5_PHAVU; Uncharacterized protein
STRINGXP_007150551.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]