PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.005G153900.1

Common Name

PHAVU_005G153900g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bZIP

Protein Properties

Length: 435aa MW: 47545.6 Da PI: 6.5137

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G153900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.2	2.3e-10	219	277	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l+ l+ l se+ Phvul.005G153900.1 219 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLSLLQRDTNGLNSEN 277 9***********************************************99998888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.4E-16	215	279	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.093	217	280	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-11	219	270	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.6E-9	219	275	No hit	No description
Pfam	PF00170	2.3E-9	219	277	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.60E-26	220	269	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MDKDKSLGHG GGLPPPSGRY SGFSPTGTVF SVKSEPPSSS STSYPPLAPG ISAPESSGFS 60 HDISRMPDNP PRNRGHRRAH SEILTLPDDI SFDSDLGVVG GVDGPSFSDD AEEDLLSMYL 120 DMDKFNSSSA TSTFQMGEPS SAMGASGSAS GAPTSSAENI AVGTHERPRV RHQHSQSMDG 180 STTIKPEMLV SGSEDLSAAD SKKAMSVAKL AELALIDPKR AKRIWANRQS AARSKERKMR 240 YIAELERKVQ TLQTEATSLS AQLSLLQRDT NGLNSENSEL KLRLQTMEQQ VHLQDALNDA 300 LKEEIQHLKI LTGQAMPPNG GGPMLNFPSY GGGQQFYPNN HAMHTLLAAQ QFQQLQIHPQ 360 KQHQFQQLQQ QQMLQQQQQQ QQHQQQQQQQ QQQQQQQQQQ QQQSTDLKTR EASPTLCPKD 420 NALSDVNPSG VKDC*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MDKDKSLGHG GGLPPPSGRY SGFSPTGTVF SVKSEPPSSS STSYPPLAPG ISAPESSGFS  60
HDISRMPDNP PRNRGHRRAH SEILTLPDDI SFDSDLGVVG GVDGPSFSDD AEEDLLSMYL  120
DMDKFNSSSA TSTFQMGEPS SAMGASGSAS GAPTSSAENI AVGTHERPRV RHQHSQSMDG  180
STTIKPEMLV SGSEDLSAAD SKKAMSVAKL AELALIDPKR AKRIWANRQS AARSKERKMR  240
YIAELERKVQ TLQTEATSLS AQLSLLQRDT NGLNSENSEL KLRLQTMEQQ VHLQDALNDA  300
LKEEIQHLKI LTGQAMPPNG GGPMLNFPSY GGGQQFYPNN HAMHTLLAAQ QFQQLQIHPQ  360
KQHQFQQLQQ QQMLQQQQQQ QQHQQQQQQQ QQQQQQQQQQ QQQSTDLKTR EASPTLCPKD  420
NALSDVNPSG VKDC*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G153900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007150443.1	0.0	hypothetical protein PHAVU_005G153900g
Swissprot	Q04088	1e-151	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	V7BWQ0	0.0	V7BWQ0_PHAVU; Uncharacterized protein
STRING	XP_007150443.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-142	bZIP family protein

Link Out ? help Back to Top
Phytozome	Phvul.005G153900.1
Entrez Gene	18631182

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]