PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G153500.1
Common NamePHAVU_005G153500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family DBB
Protein Properties Length: 241aa    MW: 26625.9 Da    PI: 4.6125
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G153500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.9e-07444539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         C+ +e+ +++  C  ++  lC++C +e H        H++
  Phvul.005G153500.1  4 QCDVCERAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44
                        7*****************************65667777765 PP
2zf-B_box30.29.4e-105386235
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                        + ++C+ +++k++ +fC +++ l+C+dC + +H+
  Phvul.005G153500.1 53 KLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHS 86
                        789*****************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.314147IPR000315B-box-type zinc finger
CDDcd000216.58E-7347No hitNo description
PfamPF006431.6E-5444IPR000315B-box-type zinc finger
SMARTSM003368.7E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501199.0445299IPR000315B-box-type zinc finger
SMARTSM003368.3E-155299IPR000315B-box-type zinc finger
PfamPF006436.9E-95395IPR000315B-box-type zinc finger
CDDcd000216.47E-85598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MKIQCDVCER APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPRCDIC  60
QDKPAFIFCV EDRALFCQDC DEPIHSPGSL SANHQRFLAT GIRVASSSIC TKDNENSHLE  120
PPNRNAQQVS TKVPSQQVPS FTPSWPVDDF LELTGYESPE KKESLQFGEL EWLTDAGIFG  180
EQFIQEALAA AEVPQLPVTH NSSSVASYRT SKSYMSQKKP RIEVQNNDDD DEYFTVPDLG  240
*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G153500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0939370.0BT093937.1 Soybean clone JCVI-FLGm-17P8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150438.11e-179hypothetical protein PHAVU_005G153500g
SwissprotQ962882e-95BBX24_ARATH; B-box zinc finger protein 24
TrEMBLV7BWP71e-178V7BWP7_PHAVU; Uncharacterized protein
STRINGXP_007150438.11e-179(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34383157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.17e-98DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Imtiaz M, et al.
    Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis.
    Plant Mol. Biol., 2015. 89(1-2): p. 1-19
    [PMID:26253592]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]