PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 744aa MW: 85034.7 Da PI: 7.249

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G149300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.3	4.8e-27	29	114	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk+++dgkw+v+++++eHnHel p Phvul.005G149300.1 29 FYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLP 114 9*************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-24	29	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.0E-28	227	320	IPR018289	MULE transposase domain
Pfam	PF04434	1.8E-8	506	540	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.46	506	542	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.2E-9	517	544	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence Send to blast
MDSSAIVGSS ISEPHHDMEF ESHEAAYAFY KEYAKSAGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFVKEHNH ELLPAQAHFF 120 RSHRSSDPLG NDVRMRRRKT SNAVSKLFSA YQNVDCLENF VKHQHDKGRS LVLEAGHAQL 180 LLELFMHMQE ENPKFFYAVD LNEEHRLRNV FWVDAKGLEN FTYFSDVVSF DTTYFTSKYK 240 IPLVLFVGVN HHIQPTLLGC ALIADETIFT YAWLLQTWLI AMGERAPQVL LTDQNDAIKA 300 AVATFLPGTR HCFCLWHILE KIPKQLQILG AWHDSFMEKF NKCIFRSWTE EQFEKRWWKL 360 VDSFSLGDVE WIRSLYDDRT CWVPTFMKDI SFAGLSTSSR SESLNSLLDN YIHVDSSLRE 420 FIEQYRVILE DRHEEEAKAN FDAWHETPDL KSPSPFEKQM LLVYTHEIFR KFQVEVLGAA 480 ACHLKKESDG VTTTYTVKDF ENSQNYLVEW NMSASDICCS CRLFEYKGYL CRHAIVVLQM 540 SGVFSIPPKY ILQRWTNAAM SRHPIGEKLE VVQSKVRRFN DLCRRAIILG EEGSLSPESY 600 YMALGAISEA LKQCVNLNNP VENGMRPDAS CTHVVCNVEE EYQSIITSNH KVPDPKLNMG 660 KKAVRIGVAC RSQGGVENSG GDKGKVSLVE AGSAKDGFQH MELTDPRSQG VMAMQFHNVV 720 PALFHNVSAP FHTAPSPHMH ENR*

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence Send to blast

MDSSAIVGSS ISEPHHDMEF ESHEAAYAFY KEYAKSAGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFVKEHNH ELLPAQAHFF  120
RSHRSSDPLG NDVRMRRRKT SNAVSKLFSA YQNVDCLENF VKHQHDKGRS LVLEAGHAQL  180
LLELFMHMQE ENPKFFYAVD LNEEHRLRNV FWVDAKGLEN FTYFSDVVSF DTTYFTSKYK  240
IPLVLFVGVN HHIQPTLLGC ALIADETIFT YAWLLQTWLI AMGERAPQVL LTDQNDAIKA  300
AVATFLPGTR HCFCLWHILE KIPKQLQILG AWHDSFMEKF NKCIFRSWTE EQFEKRWWKL  360
VDSFSLGDVE WIRSLYDDRT CWVPTFMKDI SFAGLSTSSR SESLNSLLDN YIHVDSSLRE  420
FIEQYRVILE DRHEEEAKAN FDAWHETPDL KSPSPFEKQM LLVYTHEIFR KFQVEVLGAA  480
ACHLKKESDG VTTTYTVKDF ENSQNYLVEW NMSASDICCS CRLFEYKGYL CRHAIVVLQM  540
SGVFSIPPKY ILQRWTNAAM SRHPIGEKLE VVQSKVRRFN DLCRRAIILG EEGSLSPESY  600
YMALGAISEA LKQCVNLNNP VENGMRPDAS CTHVVCNVEE EYQSIITSNH KVPDPKLNMG  660
KKAVRIGVAC RSQGGVENSG GDKGKVSLVE AGSAKDGFQH MELTDPRSQG VMAMQFHNVV  720
PALFHNVSAP FHTAPSPHMH ENR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	139	MRRRKT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G149300.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007150391.1	0.0	hypothetical protein PHAVU_005G149300g
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	V7BZA1	0.0	V7BZA1_PHAVU; Uncharacterized protein
STRING	XP_007150391.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Phvul.005G149300.1
Entrez Gene	18631136

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]