PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G145200.1
Common NamePHAVU_005G145200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 645aa    MW: 71807.8 Da    PI: 5.59
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G145200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.45e-1132766413373
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lL++cA+av+s d+++a++lL+++++++sp+gd +qRla+yf+++L+ rla    ++ + +p + ++    ++ l+a+klf+  sP+ ++
  Phvul.005G145200.1 276 TLLTQCAQAVASFDQRNANELLSQIRQHSSPYGDGLQRLAHYFANGLQIRLAA---GTPSYVPLEVAT---AADMLKAYKLFVTSSPLQRM 360
                         69**************************************************9...333334444444...789***************** PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                         s+ +a ++I   v++e+ vHiiDf+i +G+QWp+Ll+ L++R++gpp+lRiTg++ p++g   +e++eetg+rL++++++++vpfe+n  +
  Phvul.005G145200.1 361 SNYLATKTIISLVKNESSVHIIDFGICYGFQWPCLLKRLSERQGGPPRLRITGIDLPRPGfrPAERVEETGRRLENYCKKFNVPFEYNC-L 450
                         ***********************************************************9*9***************************.6 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         a+++e+++l +L+++ +E+++V++  +l++l+de+v+++ +rd+vLkl+++++P+++++   + +++++ Fl+rf eal+++s+lfd++e+
  Phvul.005G145200.1 451 AQKWETIKLADLKLDANEVTVVSCFNRLKNLPDETVAVNCPRDAVLKLIRKINPNIFIHGVVNGSYSAPFFLTRFREALYHFSSLFDMFEV 541
                         ******************************************************************************************* PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                         ++pre+++r++ E+ llgr+++nv+acegaer+er et+++W+ r  +aGFk+vpl+ + ++ ak ++++ + + + v e+ +++++gWk+
  Phvul.005G145200.1 542 NVPREDSQRVMFEKGLLGRDAMNVIACEGAERVERPETYKQWQVRNLRAGFKQVPLDPELVNYAKQMVKNEYHKDFVVAEDGKWILQGWKG 632
                         ***********************************************************************9888**************** PP

                GRAS 365 rpLvsvSaW 373
                         r L ++SaW
  Phvul.005G145200.1 633 RILNAISAW 641
                         ********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.355248622IPR005202Transcription factor GRAS
PfamPF035141.7E-110276641IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MLSTNSLLQN FGGSISVFSD QNQVAEGIEF DDSSSPSSGT SSSGESTKYS NNILRYISDI  60
LMDEEDDLES KPCMLEECLR LQAAEKSFLD VLVHRSSSFS GEIVDPDENF GRTASFESNG  120
SCTTENSCDS DLVNGVGEFD SSFLLQQTHL VYSPDVVDAF RARDGTWNLV QSHTKPVMVE  180
EGCSGSASRE KRSHQNDDGF HEQEGRRGSK VSAVFSDELE PPEILDELLL CQIGRSGSGS  240
EPSQGVDLRG SNGKATRTRP KKGSTKAGTA AVDLWTLLTQ CAQAVASFDQ RNANELLSQI  300
RQHSSPYGDG LQRLAHYFAN GLQIRLAAGT PSYVPLEVAT AADMLKAYKL FVTSSPLQRM  360
SNYLATKTII SLVKNESSVH IIDFGICYGF QWPCLLKRLS ERQGGPPRLR ITGIDLPRPG  420
FRPAERVEET GRRLENYCKK FNVPFEYNCL AQKWETIKLA DLKLDANEVT VVSCFNRLKN  480
LPDETVAVNC PRDAVLKLIR KINPNIFIHG VVNGSYSAPF FLTRFREALY HFSSLFDMFE  540
VNVPREDSQR VMFEKGLLGR DAMNVIACEG AERVERPETY KQWQVRNLRA GFKQVPLDPE  600
LVNYAKQMVK NEYHKDFVVA EDGKWILQGW KGRILNAISA WAPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-4728064324379Protein SCARECROW
5b3h_D8e-4728064324379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G145200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150339.10.0hypothetical protein PHAVU_005G145200g
TrEMBLV7BZ080.0V7BZ08_PHAVU; Uncharacterized protein
STRINGXP_007150339.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.11e-165GRAS family protein