PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G134500.1
Common NamePHAVU_005G134500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 699aa    MW: 76798.9 Da    PI: 7.9821
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G134500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.1e-24112213199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF  
  Phvul.005G134500.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL- 199
                         89****************************986445444..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+++r+
  Phvul.005G134500.1 200 -RAENGDLCVGIRRA 213
                         .4488999****997 PP
2Auxin_resp113.71.8e-37274356283
          Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         +  a+++++Fe+vY+Pra t+eF+++++ v+ a++++++ GmRfkm fetedss++++ +Gt+++v+ ldp+rWpnS+Wr+L+
  Phvul.005G134500.1 274 IALAANNQPFEIVYYPRANTPEFCIRTSAVRGAMRIQWCSGMRFKMPFETEDSSRISWfMGTIASVQVLDPIRWPNSPWRLLQ 356
                         67899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-38104215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-29107213IPR015300DNA-binding pseudobarrel domain
CDDcd100173.20E-22111212No hitNo description
PROSITE profilePS5086313.169112214IPR003340B3 DNA binding domain
SMARTSM010192.4E-23112214IPR003340B3 DNA binding domain
PfamPF023622.6E-22112213IPR003340B3 DNA binding domain
PfamPF065076.7E-32274356IPR010525Auxin response factor
PROSITE profilePS5174518.661585665IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MKETEKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQSNLDFGAS RIPIPPLVLC  60
RVAAVKFLAD PETDEVFARL RLVPLRNTEL DHEDGDNVDG NGAEGSEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG  180
WSSFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGGVGG PEAPCGWSSG GGGGGGLGIG  240
PYGAFSAFLR EESKVVRNGC GRPKVSGESV REAIALAANN QPFEIVYYPR ANTPEFCIRT  300
SAVRGAMRIQ WCSGMRFKMP FETEDSSRIS WFMGTIASVQ VLDPIRWPNS PWRLLQVTWD  360
EPDLLHNVKR VSPWLVELVS NVPVIHLAPF SPPRKKLRFP QHPEFPLDVQ FPIPTFSGNP  420
FGSSTSSPLC CLSDNAPAGI QGARHAQIGI TLSDLHLNNN KLQLGLLPTN VRQLDLHTGI  480
SNVNITNHGK SKESLSCLLT MGSSRKSLEK SDRVKRHQFL LFGQPILTEQ QISRSSGDVF  540
SQNCTATDDE NKEKKEKGFS DSQSSVSPGK SSSTTEFSWQ LGSDTSHCKV FMESEDVGRT  600
LDLSCLGSYD ELYMRLASMF GIERSEMLSH VLYRDATGAL KQTGEEPFSE FMKTAKRLTI  660
LSDSSSKDSR RIWMTGTRNA EHGLDATSNK TGPMSIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-82837751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G134500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150194.10.0hypothetical protein PHAVU_005G134500g
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLV7BYQ50.0V7BYQ5_PHAVU; Auxin response factor
STRINGXP_007150194.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]