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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G134400.1 | ||||||||
Common Name | PHAVU_005G134400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | GATA | ||||||||
Protein Properties | Length: 324aa MW: 36136.4 Da PI: 7.1668 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.4 | 9.4e-19 | 238 | 271 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C +tkTp+WR+gp g+ktLCnaCG++yr+ + Phvul.005G134400.1 238 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 271 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.833 | 232 | 268 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.7E-16 | 232 | 282 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.85E-14 | 233 | 294 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-14 | 236 | 269 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.10E-15 | 237 | 284 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 238 | 263 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.4E-16 | 238 | 271 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MSECFEPDIA NMKDSWFFDN NFNGLSDDIF DDVVGFFDFP LEDVEEDWDS QFKCLEDQHS 60 EIFSASSNGL CGKTQTENPQ LGTEFSVSCN GISPIKQLAK APGPTYGKTI PLKNVTFNGK 120 DLHQFRTYSP VSVFESSSSS SVENSNFDRP VIPVKRARSK RQRRSSLSPL FSIPYILNAQ 180 ALQNQQRTSA SESDFETNVA GNMSNKVKSH RKKDLSLLSE DVEMMRSSHL VSDPPRKCMH 240 CEVTKTPQWR EGPMGPKTLC NACGVRYRSG RLFPEYRPAA SPTFVSSLHS NCHKKVVEMR 300 SRVEEGVRGS MFASSNLHGN SVG* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00130 | DAP | Transfer from AT1G08010 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G134400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007150193.1 | 0.0 | hypothetical protein PHAVU_005G134400g | ||||
TrEMBL | T2DPM2 | 0.0 | T2DPM2_PHAVU; GATA transcription factor | ||||
STRING | XP_007150193.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5758 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 9e-39 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G134400.1 |
Entrez Gene | 18630985 |