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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.005G121800.1 |
Common Name | PHAVU_005G121800g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
NAC |
Protein Properties |
Length: 294aa MW: 32995.3 Da PI: 5.4635 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.005G121800.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 158.6 | 2.5e-49 | 17 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
+ pGfrF Ptdeel+++yL+kk++g++ ++ +vi+ev+++k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+ gyWkatgk++
Phvul.005G121800.1 17 MFPGFRFCPTDEELISYYLRKKLDGHEESV-QVISEVELCKYEPWDLPaKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKER 106
579************************988.99***************667777899********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+v+s +++ +g+k+tLvf+ grapkge+t+W+mhey +
Phvul.005G121800.1 107 NVKS-GSNFIGTKRTLVFHLGRAPKGERTEWIMHEYCI 143
****.999****************************86 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009845 | Biological Process | seed germination |
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
GO:0033619 | Biological Process | membrane protein proteolysis |
GO:0048573 | Biological Process | photoperiodism, flowering |
GO:0071472 | Biological Process | cellular response to salt stress |
GO:0005634 | Cellular Component | nucleus |
GO:0005886 | Cellular Component | plasma membrane |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MEGVSREAHM SIAASSMFPG FRFCPTDEEL ISYYLRKKLD GHEESVQVIS EVELCKYEPW 60 DLPAKSFIQS DNEWFFFSPR GRKYPNGSQS KRATECGYWK ATGKERNVKS GSNFIGTKRT 120 LVFHLGRAPK GERTEWIMHE YCINDRSQDS LVICRLKRNT EFRLSDHSNR ASSSQRHPVN 180 SHESGCAISE GGGIDQRDVC EQDKEVGCSS KRSSSSYGSP SNEQIDSVSE SNHRPVNEAT 240 LTASSDQPKE VYEEDCYAEI LKDDIIKLDE SSISGEGHTR AEEPAPQGTQ GRE*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-46 | 8 | 158 | 2 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-46 | 8 | 158 | 2 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-46 | 8 | 158 | 2 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-46 | 8 | 158 | 2 | 164 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-46 | 8 | 158 | 2 | 164 | NAC domain-containing protein 19 |
4dul_B | 2e-46 | 8 | 158 | 2 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015040 | 1e-140 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |