PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G114600.1
Common NamePHAVU_005G114600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 764aa    MW: 83309.5 Da    PI: 6.0567
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G114600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.9e-20109164156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R++ k
  Phvul.005G114600.1 109 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQIK 164
                         688999**********************************************9987 PP
2START2161.3e-672845041206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         ela +a++el+ +a+ ++p+W +      + +n+de++++f+++ +     ++ ea+r+ +vv+m+++ lve+l+d++ qW++ +     +
  Phvul.005G114600.1 284 ELAVAAMEELIGMAQMGDPLWLTTLdgttTVLNEDEYIRSFPRGIGpkpagFKCEASRENAVVIMNHVSLVEILMDVN-QWSTVFSgivsR 373
                         57899********************999999************999********************************.************ PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a+tlev+s+g      galq+m+ae q++splvp R+++fvRy++ +g+g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng+s
  Phvul.005G114600.1 374 AMTLEVLSTGvagnynGALQVMTAEVQVPSPLVPtRESYFVRYCKHHGDGTWAVVDVSLDNLRPSP----SARCRRRPSGCLIQEMPNGYS 460
                         ****************************************************************99....5******************** PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kv+wvehv++++r +h+l+++lv+sg+a+gak+w atl+rqce+
  Phvul.005G114600.1 461 KVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCER 504
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-2488164IPR009057Homeodomain-like
SuperFamilySSF466893.3E-1998166IPR009057Homeodomain-like
PROSITE profilePS5007116.827106166IPR001356Homeobox domain
SMARTSM003893.0E-19107170IPR001356Homeobox domain
CDDcd000863.26E-19109167No hitNo description
PfamPF000461.0E-17109164IPR001356Homeobox domain
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
PROSITE profilePS5084843.128275507IPR002913START domain
SuperFamilySSF559613.19E-33277505No hitNo description
CDDcd088752.95E-127279503No hitNo description
SMARTSM002342.1E-60284504IPR002913START domain
PfamPF018528.0E-57285504IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-5384499IPR023393START-like domain
SuperFamilySSF559611.1E-24524755No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MPAGIMIPAR NMPSMIGRNG NVVGFGLSSG LSLGQIENHK ASESQRSVEM FQPNLMEAGQ  60
LLPLDMPQNT SESDVPRIRE DDFDSATKSG SENQEGASGE DQDPRPNKKK RYHRHTQHQI  120
QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQIKTQHERH ENTQLRTEND  180
KLRADNMRFR EALSNASCPN CGGPTAIGEM SFDEHHLRLE NARLREEIDR ISGIAAKYVG  240
KPVVSYPLLS PSSVPPRPLE LGIGGQNSRF LFSMSEADKP IIIELAVAAM EELIGMAQMG  300
DPLWLTTLDG TTTVLNEDEY IRSFPRGIGP KPAGFKCEAS RENAVVIMNH VSLVEILMDV  360
NQWSTVFSGI VSRAMTLEVL STGVAGNYNG ALQVMTAEVQ VPSPLVPTRE SYFVRYCKHH  420
GDGTWAVVDV SLDNLRPSPS ARCRRRPSGC LIQEMPNGYS KVIWVEHVEV DDRGVHNLYK  480
QLVSSGHAFG AKRWIATLDR QCERLACAMA TNIPTVDVGV ITNQDGRKSM LKLAERMVIS  540
FCAGVSASTA HTWTTLSGTG ADDVRVMTRK SVDDPGRPPG IVLSAATSFW LPVSPKRVFE  600
FLRDENSRSE WDILSNGGVV QEMAHIANGR ETGNCVSLLR VNSANSSQSN MLILQESCAD  660
STGSFVIYAP VDIVAMNVVL NGGDPDYVAL LPSGFAILPD GTTAHGGSIG DTGNGGSLLT  720
VAFQILVDSV PTAKLSLGSV ATVNNLIACT VERIKAALSG EVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G114600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311700.0KT031170.1 Glycine max clone HN_CCL_122 homeodomain/HOMEOBOX transcription factor (Glyma13g38430.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149968.10.0hypothetical protein PHAVU_005G114600g
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLV7BVC70.0V7BVC7_PHAVU; Uncharacterized protein
STRINGXP_007149968.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2