PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G112100.1 | ||||||||
Common Name | PHAVU_005G112100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27376.3 Da PI: 9.9422 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.7 | 3.8e-07 | 110 | 150 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+++ ++ L++l+P++ kK++ + Le+A +Y++ Lq Phvul.005G112100.1 110 RQRRQKLSEKTRYLQKLMPWD-----KKMDQGTLLEEAYKYVRFLQ 150 9*******************9.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.769 | 100 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0011 | 106 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-10 | 106 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.63E-5 | 108 | 152 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.4E-9 | 109 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-4 | 110 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MIMYPGDGSS LDPMFSGTSL QSLLSLNPSI LEDGFPTLAS LTDDPTLIPQ PSEVPKLLVP 60 KTEPSQPFKF FPQYHPTPFL HLPQLRSPDQ PQPKRQRMES PLIPQSNLAR QRRQKLSEKT 120 RYLQKLMPWD KKMDQGTLLE EAYKYVRFLQ AQFRVLQSMP SHSSSSSSSS RQNTAAVFVD 180 LEKLNRSQLL QVLVNSPVAQ TMLYSQGFCV FSLEQLSLLR QLSDRKHQHH DSAFSKSVFN 240 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G112100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007149941.1 | 1e-173 | hypothetical protein PHAVU_005G112100g | ||||
TrEMBL | V7BY10 | 1e-171 | V7BY10_PHAVU; Uncharacterized protein | ||||
STRING | XP_007149941.1 | 1e-172 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13426 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22100.1 | 2e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G112100.1 |
Entrez Gene | 18630756 |