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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G109700.1 | ||||||||
Common Name | PHAVU_005G109700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 37400.3 Da PI: 4.9346 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.8e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +lv +v+++G+ +W+ +r g++R++k+c++rw++yl Phvul.005G109700.1 13 KGTWTQEEDRKLVAYVTRYGTWNWRQLPRFAGLTRCGKSCRLRWLNYL 60 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.5e-17 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+ E+e +++++++lG++ W+ Ia +++ gRt++++k+ w++ Phvul.005G109700.1 66 RGNFTEKEEETIIKLHEELGNK-WSVIATHLP-GRTDNEIKNQWHTT 110 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.745 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.5E-30 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-23 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.64E-9 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 24.422 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 66 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.41E-11 | 68 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 68 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MRTPSWDSSG LKKGTWTQEE DRKLVAYVTR YGTWNWRQLP RFAGLTRCGK SCRLRWLNYL 60 RPNIKRGNFT EKEEETIIKL HEELGNKWSV IATHLPGRTD NEIKNQWHTT LKKRFGKKAV 120 HTKTNVKAAK SNSSVSNQDK DSIQNNGFFH EDSPSPTISR ASDPDPLSLE VSSIEFSSTT 180 SDYTTNDNLL MEEGFDFLYA CLEDLNQNIS TESLHISHGT IQNNGIENFH GSDPMTMEHV 240 WAESPLSSYN ENVVVENDDF GFLEAIQPIT ENSWREAFVA DTSLIPNEFL VPLVNESESY 300 FSSTYDARDI WCLRDNSHDL DVNLFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 11 | 115 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G109700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007149915.1 | 0.0 | hypothetical protein PHAVU_005G109700g | ||||
TrEMBL | V7BVC8 | 0.0 | V7BVC8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007149915.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16747 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 3e-55 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G109700.1 |
Entrez Gene | 18630732 |