PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.005G100100.1

Common Name

PHAVU_005G100100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

NAC

Protein Properties

Length: 278aa MW: 31629.6 Da PI: 8.4821

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G100100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.9	2.1e-32	47	187	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i+ ++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ Phvul.005G100100.1 47 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICCTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHtdad 135 799*********9.99*99984443333332222333336******.555555677**************7444465 PP NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +W++tgk+++v+ +g+l+g kk+Lv+y++ +++k+ekt+Wvmh+y+l Phvul.005G100100.1 136 gsETRWHKTGKTRPVFI-SGKLKGYKKILVLYTNyrKQRKPEKTNWVMHQYHL 187 55788********.999*******5444788889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-37	42	206	IPR003441	NAC domain
PROSITE profile	PS51005	32.632	47	206	IPR003441	NAC domain
Pfam	PF02365	1.4E-15	48	187	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MTQCSYPENN HTIVERHKDS LIRTCPTCGH HINCQEQAAG IHDLPGLPAG VKFDPTDQEI 60 LEHLEAKVRS DIHKLHPLID EFIPTLEGEN GICCTHPEKL PGVSKDGLIR HFFHRPSKAY 120 TTGTRKRRKV HTDADGSETR WHKTGKTRPV FISGKLKGYK KILVLYTNYR KQRKPEKTNW 180 VMHQYHLGNN EEEKEGELVV SKVFYQTQPR QCGSLTKDSY PAKLNGESVH EVTNHKSTGF 240 VEYYNNSFVS FDQGDQHRPS SALVNHFPLH DGATFIP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G100100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007149803.1	0.0	hypothetical protein PHAVU_005G100100g
Swissprot	O49459	1e-116	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	V7BUX1	0.0	V7BUX1_PHAVU; Uncharacterized protein
STRING	XP_007149803.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-106	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Phvul.005G100100.1
Entrez Gene	18630636

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]