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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.005G099800.1 |
Common Name | PHAVU_005G099800g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
C2H2 |
Protein Properties |
Length: 464aa MW: 50988.4 Da PI: 9.0063 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.005G099800.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 14.7 | 8.7e-05 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C k F r nL+ H r H
Phvul.005G099800.1 60 FVCEICLKGFQRDQNLQLHRRGH 82
89*******************88 PP
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2 | zf-C2H2 | 13.5 | 0.00021 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k++ +s+ k H +t+
Phvul.005G099800.1 136 WKCEKCSKRYAVQSDWKAHSKTC 158
58*****************9998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 464 aa
Download sequence Send
to blast |
MLEKMDDGEI SNAFPLQNPS TAASNQPPAL KRKRNLPGNP DPEAEVIALS PKTLMATNRF 60 VCEICLKGFQ RDQNLQLHRR GHNLPWKLKQ RTSKEVRKRV YVCPEKTCVH HHPSRALGDL 120 TGIKKHFCRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYKCDCGTI FSRRDSFITH 180 RAFCDALAEE TARVNAASNI SNYSIMQNPL GPNMTTHFSS FFKPNSCPEE PLLGNQTSKG 240 LSLWMTQTSQ AHQTIANNNL HEFQQLGSAT SPTSIYCGGG GGNPLAPCSN PPPSNYQLNW 300 VFGNKLSSNG SQELTSSASL PLVDNIVKDN PNLQLISVPS LYSSQHQSHQ TTSANMSATA 360 LLQKAAQIGT TSSDPSLFLG SIGLKCNSPG QDGNKFCGMY GSSSVLTSHE GENNYSGDLS 420 QMPPAKRRHV QNEESAWGQT RDFLGVGGAN HLPPFINQRM DLI*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |