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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G091000.1 | ||||||||
Common Name | PHAVU_005G091000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 25503.2 Da PI: 6.0713 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2.1e-11 | 74 | 121 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ++l + + +K +Ka+iL Av+ + +L Phvul.005G091000.1 74 SKACREKLRRDRLNDKFVELGSILEPG---RPPKTDKAAILIDAVRMVTQL 121 6789**********************8...89**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.836 | 70 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.57E-8 | 73 | 126 | No hit | No description |
Pfam | PF00010 | 4.8E-9 | 74 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-13 | 74 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-13 | 75 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-9 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 0.00698 | 136 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVSPENSNWL FDYPLIDDDI TVGDGSFTVS AFSWPPPPSN VSVEIDASLV DSDGLKDPAL 60 KKRGRSDLCT ASSSKACREK LRRDRLNDKF VELGSILEPG RPPKTDKAAI LIDAVRMVTQ 120 LRDEAQKLKE SNTGLQEKIK ELKTEKNELR DEKQRLKVEK EKLELQVKSM NAQPAFLPPP 180 SAIPAAFAPQ GQAPGNKLVP FISYPGVAMW QFMPPAAVDT SQDHVLRPPV A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 65 | LKKRGRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G091000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097393 | 0.0 | BT097393.1 Soybean clone JCVI-FLGm-21P18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007149692.1 | 1e-168 | hypothetical protein PHAVU_005G091000g | ||||
Swissprot | Q9FH37 | 1e-111 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | U5TZE9 | 1e-167 | U5TZE9_PHAVU; Transcription factor ILR3 | ||||
STRING | XP_007149692.1 | 1e-167 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 4e-86 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G091000.1 |
Entrez Gene | 18630538 |