PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G089900.1
Common NamePHAVU_005G089900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 583aa    MW: 64859.6 Da    PI: 6.3811
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G089900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.91.4e-1262105801373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++cA+a+++++ +  ++l+ + ++ +s +g+p+qRl ay++e+L ar + s++++y+al+++e +    +e l++++l++e++P+l
  Phvul.005G089900.1 210 LKQLLIACAKALHEDKVKDFDELVGKARDAVSINGEPIQRLGAYMVEGLVARKQASGKSIYHALRCREPE---GEELLSYMHLLFEICPYL 297
                         689******************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf++++aN aI ea  +e+r+HiiDf+i qG QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le +g+rLa + +++g+++ef+ 
  Phvul.005G089900.1 298 KFGYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGDGLEIVGKRLALMSKKFGIHVEFHG 388
                         ***********************************************************999999************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v     +++ e+L+++pgEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkv ++veqe+++n+++F++rf+e+l+yy a+f+s+
  Phvul.005G089900.1 389 -VPVFAPEVTREMLDIRPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIFESI 478
                         .6888999*********************************************************************************** PP

                GRAS 272 .eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                          ++ lpr+s+eri+vE+++l+r+ivn++aceg+er+erhe l+kW++rl++aGF++ pls+++++ +  ll+ ++ + y++ e++g+++lg
  Phvul.005G089900.1 479 dASLLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFSQCPLSSYVNSVIGILLKCYS-EHYTLLEKDGAMLLG 568
                         66668******************************************************************9888.66************* PP

                GRAS 362 WkdrpLvsvSaW 373
                         Wkdr+L+s+SaW
  Phvul.005G089900.1 569 WKDRNLISASAW 580
                         ************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.253184562IPR005202Transcription factor GRAS
PfamPF035144.8E-124210580IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MDSQQLFSFG VASAGLPYMP SFPTIPSLPN RLLGSLKYDT GNSPNSPFST YFDSDTLSAL  60
SDSQEQYSPR ENLSGVSTSC NSSLETNPYM HGSISSVDFI DNFPLYSARN SLPQNVNCNQ  120
KIQHALLELE TALMAPDDDQ VTTPNTLSES SRPMASGQRN RSWRHENHGS QYAQPSYVPS  180
SRLSSEVVHV EKRQKLMEEP ALQAFPPNNL KQLLIACAKA LHEDKVKDFD ELVGKARDAV  240
SINGEPIQRL GAYMVEGLVA RKQASGKSIY HALRCREPEG EELLSYMHLL FEICPYLKFG  300
YMAANGAIAE ACRNEDRIHI IDFQIAQGSQ WMTLLQALAA RPGGAPHVRI TGIDDPVSKY  360
ARGDGLEIVG KRLALMSKKF GIHVEFHGVP VFAPEVTREM LDIRPGEALA VNFPLQLHHT  420
ADESVHVSNP RDGLLRLVKS LSPKVTTLVE QESNTNTTPF FNRFIETLDY YLAIFESIDA  480
SLLPRDSKER INVEQHCLAR DIVNIIACEG KERVERHELL GKWKSRLTMA GFSQCPLSSY  540
VNSVIGILLK CYSEHYTLLE KDGAMLLGWK DRNLISASAW HC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-612125816375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G089900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149678.10.0hypothetical protein PHAVU_005G089900g
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLV7BUK00.0V7BUK0_PHAVU; Uncharacterized protein
STRINGXP_007149678.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-169GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]