PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.005G087800.1

Common Name

PHAVU_005G087800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

NZZ/SPL

Protein Properties

Length: 303aa MW: 33168.7 Da PI: 7.1019

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G087800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	35.9	1.6e-11	18	300	42	314
NOZZLE 42 srgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvvatvgdtssvaaisnta....trlpvpvdrgvvlqgfps......slgss 122 r r +t + kkp rg+gva+ler +i+e kk+ + g a r p p + g +q +g++ Phvul.005G087800.1 18 GRSRSRSRRTNGKGPKKPPQRGLGVAQLERLRIQESWKKMSEGSSGVLPVTALHDHHQqqlfQRHPSP-NLGFQFQCPQHvisgnnNIGGD 107 345555678899999***********************9999988774444433331111456633.4566555433355566666765 PP NOZZLE 123 rilcg.gvgsgqvmidpvispwgfvetsatthelssisnpqmynassnnrcdtcfkkkrldgdqnnvvrsngggfskytmipppmngyde. 211 i+ vg g p + +ets elssi+n s + d c+kk r++ d++ sn + ng+d Phvul.005G087800.1 108 WIVPNrVVGNGSYGSGPPLLVGTPLETSK---ELSSIPNLH----SQPECFDFCLKKTRFNEDNE--KGSNARR---ERTLEIWPNGHDFl 186 55443135666666666555555677776...*9964....5556569*******9983..3444443...33333333666651 PP NOZZLE 212 .yllqsdhhq..rsqgflydqriaraasvsa.asasinpyfne..atnltgsreefgsvl..egnprngsrgv..keyeffp.gkydervs 291 ++ qs + +yd ++ar s sa a a+ n e a g+ ++ e p + rg ke ef g + Phvul.005G087800.1 187 gFMPQSSVSNlvGETSDFYD-KLARHDSASAyACATPNDECVEvvAVHRRGNSTSGRVFMeyEFFPGKDGRGTtsKELEFPTtGSVAVGSG 276 14444443221123445777.5788776555244555655555222333343322222331133454444443125666532133322222 PP NOZZLE 292 .kvakvaslvgdcspntidlslkl 314 + +a++ gd + n idlslkl Phvul.005G087800.1 277 eASSITAAAYGDSASNYIDLSLKL 300 134556778899999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	2.0E-11	18	280	IPR014855	Plant transcription factor NOZZLE

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MASEHNMFHE EEGKDEAGRS RSRSRRTNGK GPKKPPQRGL GVAQLERLRI QESWKKMSEG 60 SSGVLPVTAL HDHHQQQLFQ RHPSPNLGFQ FQCPQHVISG NNNIGGDWIV PNRVVGNGSY 120 GSGPPLLVGT PLETSKELSS IPNLHSQPEC FDFCLKKTRF NEDNEKGSNA RRERTLEIWP 180 NGHDFLGFMP QSSVSNLVGE TSDFYDKLAR HDSASAYACA TPNDECVEVV AVHRRGNSTS 240 GRVFMEYEFF PGKDGRGTTS KELEFPTTGS VAVGSGEASS ITAAAYGDSA SNYIDLSLKL 300 SR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G087800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007149653.1	0.0	hypothetical protein PHAVU_005G087800g
TrEMBL	V7BUH9	0.0	V7BUH9_PHAVU; Uncharacterized protein
STRING	XP_007149653.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8365	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27330.1	7e-07	sporocyteless (SPL)

Link Out ? help Back to Top
Phytozome	Phvul.005G087800.1
Entrez Gene	18630504