PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G080400.1
Common NamePHAVU_005G080400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 281aa    MW: 32263.4 Da    PI: 7.0761
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G080400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.82.2e-23131192159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy WrKYGqK  +++++ rsYYrCt++   gCp+ k+v+r +edp +  +tY g+Hn++
  Phvul.005G080400.1 131 MEDGYVWRKYGQKITTNAKYFRSYYRCTHKhdkGCPAIKQVQRIQEDPPLYRTTYYGNHNCK 192
                         58***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-24120193IPR003657WRKY domain
SuperFamilySSF1182901.7E-23126193IPR003657WRKY domain
PROSITE profilePS5081121.138126190IPR003657WRKY domain
SMARTSM007748.0E-33131193IPR003657WRKY domain
PfamPF031062.0E-23132192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MENQLSKERR AMEEELVRGR EIANQLLEVC VHRSNTHHHE DVHMLPFIED LVRKVLCSFT  60
NTLLLLNTDN DVTNEVSMPL TVKDTPSFAK CPKPQHTDEV CKSFLQTEKR RGYYKKKSSA  120
PTWVTNSSIL MEDGYVWRKY GQKITTNAKY FRSYYRCTHK HDKGCPAIKQ VQRIQEDPPL  180
YRTTYYGNHN CKSYSSSDII MESASPSGSS VFLSFSNTLP TKQQYQLQSS SLSSSTKQEP  240
VEVIQGELID DHSPLASSDY LLLCDYELDF NYMGHVTTLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18126192169OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G080400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-166AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149559.10.0hypothetical protein PHAVU_005G080400g
TrEMBLV7BWY40.0V7BWY4_PHAVU; Uncharacterized protein
STRINGXP_007149559.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-26WRKY DNA-binding protein 70