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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G074000.1 | ||||||||
Common Name | PHAVU_005G074000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | SBP | ||||||||
Protein Properties | Length: 192aa MW: 21608.1 Da PI: 8.5783 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.8 | 2.1e-40 | 69 | 146 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e C adl+ ak+yhrrhkvCe hskap v+v+g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++a Phvul.005G074000.1 69 ACQAEMCCADLTVAKRYHRRHKVCELHSKAPFVMVAGMRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNA 146 5**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.2E-34 | 63 | 131 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.829 | 67 | 144 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-36 | 68 | 148 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-30 | 70 | 143 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MDIKSRDRRQ VSIEKVRRDS PVEIEDEEEE EDESVAGGEG FLAEDERKKG GGGGGGRRGS 60 TGGGVSPPAC QAEMCCADLT VAKRYHRRHK VCELHSKAPF VMVAGMRQRF CQQCSRFHEL 120 AEFDEAKRSC RRRLARHNER RRKSNAETCN EGCSGSKGQH PAESLCRNAD DWGRIQMNMA 180 RNSGYRSFHF R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-32 | 61 | 143 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 56 | KGGGGGGGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G074000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098928 | 1e-180 | BT098928.1 Soybean clone JCVI-FLGm-16D18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007149482.1 | 1e-138 | hypothetical protein PHAVU_005G074000g | ||||
Swissprot | Q38741 | 2e-39 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | V7BY24 | 1e-137 | V7BY24_PHAVU; Uncharacterized protein | ||||
STRING | XP_007149482.1 | 1e-137 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 2e-28 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G074000.1 |
Entrez Gene | 18630361 |
Publications ? help Back to Top | |||
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