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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G046200.1 | ||||||||
Common Name | PHAVU_005G046200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 169aa MW: 18798.9 Da PI: 9.8698 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00089 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Phvul.005G046200.1 40 FECKTCNRKFSSFQALGGHRASH 62 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.6 | 9.7e-05 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Phvul.005G046200.1 89 HECTICGQEFSLGQALGGHMRRH 111 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.19 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.39E-8 | 40 | 111 | No hit | No description |
Pfam | PF13912 | 1.0E-10 | 40 | 64 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.408 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.7E-4 | 87 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.085 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-9 | 89 | 113 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.847 | 89 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MKRQREMDGL ATIDLANCLM LLSCPQQKKL QPKYVEGVEF ECKTCNRKFS SFQALGGHRA 60 SHKRSKLEGY EHKADAMSLS LGINKPKMHE CTICGQEFSL GQALGGHMRR HRASIKDHFS 120 PINHVAQVPV LKRSNSSRGM CMDLNLTPLE NDFKLLFGKM APNVGALV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G046200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-164 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007149157.1 | 1e-123 | hypothetical protein PHAVU_005G046200g | ||||
Swissprot | Q9SLD4 | 1e-40 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | V7BX72 | 1e-122 | V7BX72_PHAVU; Uncharacterized protein | ||||
STRING | XP_007149157.1 | 1e-123 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 5e-43 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G046200.1 |
Entrez Gene | 18630075 |